Detailed information NTG0349139

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EZZ81_RS04675
• Genome accession: NZ_CP036495
• Coordinates: 982465..983805 (-)
• Length: 446 a.a.
• NCBI ID: WP_029243827.1
• Uniprot ID: A0AA46VTB4
• Organism: Pseudomonas viridiflava strain Psy35
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 977465..988805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZZ81_RS04665 (EZZ81_04755)	-	980600..981001 (+)	402	WP_029243825.1	type IV pilin protein	-
EZZ81_RS04670 (EZZ81_04760)	thiO	981029..982141 (+)	1113	WP_029243826.1	glycine oxidase ThiO	-
EZZ81_RS04675 (EZZ81_04765)	pilR	982465..983805 (-)	1341	WP_029243827.1	sigma-54 dependent transcriptional regulator	Regulator
EZZ81_RS04680 (EZZ81_04770)	pilS	983808..985400 (-)	1593	WP_025993973.1	nitrogen regulation protein NR(II)	Regulator
EZZ81_RS04685 (EZZ81_04775)	-	985390..985629 (-)	240	WP_080665289.1	PP0621 family protein	-
EZZ81_RS04690 (EZZ81_04780)	-	985753..986775 (-)	1023	WP_004884073.1	outer membrane protein assembly factor BamD	-
EZZ81_RS04695 (EZZ81_04785)	rluD	986925..987887 (+)	963	WP_004884074.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
EZZ81_RS04700 (EZZ81_04790)	pgeF	987884..988612 (+)	729	WP_029243828.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49988.25 Da
• Isoelectric Point: 6.4269

>NTDB_id=349139 EZZ81_RS04675 WP_029243827.1 982465..983805(-) (pilR) [Pseudomonas viridiflava strain Psy35]
MTPRQKILIVDDEPDIRELLEITLGRMKLDTRSACNVAEARQYLAREAFDLCLTDMRLPDGNGLELVQHIQQNFAHVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLGRLRELVNSALRLTPVVQPIRALDNRLLGDSPPMRILRSQIAKLARSQAPV
YISGESGSGKELVARLIHEQGPRGEKPFVPVNCGAIPSDLMESEFFGHRKGSFTGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAI
VLQRLATNSGLPAARLDAQALDTLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESARPQESDGPNLADIDNLE
DYLEGIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=349139 EZZ81_RS04675 WP_029243827.1 982465..983805(-) (pilR) [Pseudomonas viridiflava strain Psy35]
ATGACCCCACGGCAAAAGATCCTGATCGTCGATGATGAGCCGGACATTCGCGAACTCCTGGAGATCACTCTGGGCCGGAT
GAAGCTCGACACCCGCAGCGCCTGCAATGTCGCCGAGGCACGCCAGTATCTGGCTCGCGAAGCATTCGACCTGTGCCTGA
CGGACATGCGCCTGCCGGATGGCAACGGCCTGGAGCTGGTGCAGCATATCCAGCAGAACTTCGCTCACGTCCCGGTGGCG
ATGATCACCGCGCATGGCAGTCTGGACACCGCTATCCACGCGCTCAAGGCCGGTGCGTTCGACTTCCTGACCAAGCCGGT
GGACCTCGGTCGCCTGCGTGAGCTGGTCAACAGCGCGCTGCGCCTTACGCCCGTCGTGCAGCCTATACGCGCTCTGGACA
ACCGCCTGCTGGGCGATTCGCCGCCCATGCGCATACTGCGCAGCCAGATCGCCAAACTGGCGCGCAGTCAGGCCCCCGTT
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCAGATTGATTCACGAACAAGGGCCACGCGGAGAGAAACC
CTTCGTGCCGGTCAACTGCGGCGCCATTCCTTCCGACCTGATGGAAAGCGAATTCTTCGGGCATCGCAAAGGCAGCTTCA
CCGGTGCCCATGAAGACAAGCCGGGGCTGTTCCAGGCGGCGCAGAACGGCACGCTGTTTCTGGACGAGGTGGCCGATCTG
CCGCTGGCCATGCAGGTCAAACTGCTGCGCGCGATTCAGGAGAAGTCCATCCGCAGCGTTGGCGGCCAGCAGGAACAGGT
GGTGGATGTACGGATTCTCTGTGCAACCCATAAGGACCTGAACGTAGAGGTGGCCGCAGGACGCTTCCGGCAGGATTTGT
ATTACCGATTGAACGTCATCGAGTTGCGCGTACCGTCGCTGCGTGAGCGTCGTGAAGACATCGACCAACTGGCCGCCATC
GTCCTGCAGCGTCTGGCGACCAACAGCGGGCTGCCCGCCGCCAGACTCGACGCCCAGGCACTGGATACGCTGAAAAACTA
TCGTTTTCCCGGCAACGTTCGTGAGCTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGACGAAATCCATG
CGTCCGACCTGCGCCTGACCGAGTCTGCAAGACCACAGGAAAGCGACGGCCCGAACCTGGCCGACATCGACAATCTGGAA
GATTACCTGGAAGGCATCGAGCGCAAACTGATTCTTCAGGCCCTGGAAGAAACCCGCTGGAACCGCACAGCGGCGGCCCA
GCGACTGAGCCTGTCGTTCAGGTCGATGCGTTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	99.327	0.791
pilR	Acinetobacter baumannii strain A118	49.676	100	0.516