Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   EZZ81_RS04680 Genome accession   NZ_CP036495
Coordinates   983808..985400 (-) Length   530 a.a.
NCBI ID   WP_025993973.1    Uniprot ID   A0AA46VV11
Organism   Pseudomonas viridiflava strain Psy35     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 978808..990400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ81_RS04665 (EZZ81_04755) - 980600..981001 (+) 402 WP_029243825.1 type IV pilin protein -
  EZZ81_RS04670 (EZZ81_04760) thiO 981029..982141 (+) 1113 WP_029243826.1 glycine oxidase ThiO -
  EZZ81_RS04675 (EZZ81_04765) pilR 982465..983805 (-) 1341 WP_029243827.1 sigma-54 dependent transcriptional regulator Regulator
  EZZ81_RS04680 (EZZ81_04770) pilS 983808..985400 (-) 1593 WP_025993973.1 nitrogen regulation protein NR(II) Regulator
  EZZ81_RS04685 (EZZ81_04775) - 985390..985629 (-) 240 WP_080665289.1 PP0621 family protein -
  EZZ81_RS04690 (EZZ81_04780) - 985753..986775 (-) 1023 WP_004884073.1 outer membrane protein assembly factor BamD -
  EZZ81_RS04695 (EZZ81_04785) rluD 986925..987887 (+) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EZZ81_RS04700 (EZZ81_04790) pgeF 987884..988612 (+) 729 WP_029243828.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58353.43 Da        Isoelectric Point: 6.9006

>NTDB_id=349140 EZZ81_RS04680 WP_025993973.1 983808..985400(-) (pilS) [Pseudomonas viridiflava strain Psy35]
MTAEPLSLGSAQAQRILRLYHLYRLVIGVLLVSLISSSLDTELLQMANPNLFRAGCWLYLVSNILVVVLLERPSRQSHLF
SLALADAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISLGTPSVSSDYVQAGLLG
AMCFAAAMLVQALTARMLNSEVLAKQRAADVDNLEELNALILQRMRTGILVLDARRQVLLANQGALNLLGHEQLVGEVID
HYCPQLVDRLRHWLINPVMVPRSLSTSAIGPELQPSFAAVNRGDQLQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTAPDRRLGQIIHDQSRRINLVIENVLQLSRRREAQREVLDLKYWLEAFVAEFRSTAPPD
QRVETEIGVGMLTTRMDPEQLNQVVTNLLQNGLRYSRQHHSTAQVLLRLYHDQKSDLPTLEVLDDGPGVSEKHLSRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCMRITFAHPFKPS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=349140 EZZ81_RS04680 WP_025993973.1 983808..985400(-) (pilS) [Pseudomonas viridiflava strain Psy35]
GTGACCGCTGAGCCCCTTTCGCTCGGCAGTGCCCAAGCGCAACGGATCCTGCGGCTTTATCACCTTTATCGCCTCGTCAT
CGGCGTCCTGCTGGTATCGCTGATTTCCAGCAGCCTGGACACCGAACTGTTGCAGATGGCCAACCCGAACCTGTTTCGCG
CAGGCTGCTGGCTGTATCTGGTGTCCAACATTCTGGTGGTGGTGCTGCTGGAGCGGCCGAGCCGTCAGTCTCACCTTTTC
AGCCTGGCGCTGGCAGACGCGATCATGCTGTCTGGCCTTTTCTACGCAGCAGGCGGTCCTTCGAGTGGTATCGGCAACCT
GCTGATCGCGTCGGTCGCGATCAGTAATGTGCTGTTGCGTGGCCGCATCGGGCTGCTGATCGCGGCCGTCTCGGCCATCG
GCATCATCTACCTGACCTTCTACATCAGCCTCGGGACGCCATCGGTTTCCAGCGACTACGTGCAGGCCGGCCTGCTTGGT
GCCATGTGCTTCGCTGCCGCAATGCTGGTCCAGGCACTCACGGCACGCATGCTGAACAGCGAAGTGCTGGCCAAACAGCG
GGCTGCCGATGTCGATAACCTCGAAGAACTCAACGCCCTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGCGCGCTGAACCTGCTCGGGCATGAGCAACTGGTCGGCGAAGTGATCGAC
CATTACTGCCCGCAATTGGTGGATCGCCTGCGCCACTGGTTGATTAACCCGGTCATGGTGCCGCGCAGCCTCTCGACTTC
TGCCATCGGGCCAGAGCTGCAACCCAGCTTTGCAGCGGTCAACCGAGGCGATCAGCTCCAGACCCTGATTTTCCTGGAAG
ACCTGTCGCAGGTCGCCCATCAGGCCCAGCAGCTCAAGCTCGCCGCACTGGGCCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAACCCGCTCGGCGCGGTCAGCCATGCGGCGCAGTTGCTGAACGAGTCGGAAGAATTGACAGCACCGGACCGTCG
CTTGGGGCAGATCATTCATGACCAGTCACGGCGGATCAATCTGGTCATCGAGAACGTGCTGCAACTGTCCAGACGACGTG
AAGCCCAGCGTGAGGTGCTTGACCTGAAATACTGGCTGGAAGCCTTTGTTGCGGAGTTTCGCAGCACCGCCCCGCCTGAT
CAAAGGGTTGAGACCGAAATCGGTGTCGGCATGCTGACCACGCGCATGGACCCCGAGCAGTTGAATCAGGTAGTCACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGTCGTCAGCACCACTCCACCGCACAGGTGCTGCTGAGGCTGTATCACGATCAGA
AAAGCGATCTGCCGACACTGGAGGTTCTGGATGACGGCCCCGGCGTCAGCGAGAAACACCTGAGCAGATTGTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGGACGGGCCTTGGCCTCTACCTGTCGCGCGAGTTATGCGAAAGCAATCAGGCCCACCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGCATGCGGATTACCTTCGCCCACCCGTTCAAACCGAGCTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.582

100

0.617

Multiple sequence alignment