Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   TERTU_RS04145 Genome accession   NC_012997
Coordinates   993964..994455 (+) Length   163 a.a.
NCBI ID   WP_015818796.1    Uniprot ID   -
Organism   Teredinibacter turnerae T7901     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 988964..999455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS04135 (TERTU_0943) - 991505..992167 (-) 663 WP_015817502.1 LuxR C-terminal-related transcriptional regulator -
  TERTU_RS04140 (TERTU_0944) - 992527..993873 (+) 1347 WP_015819252.1 MFS transporter -
  TERTU_RS04145 (TERTU_0945) ssb 993964..994455 (+) 492 WP_015818796.1 single-stranded DNA-binding protein Machinery gene
  TERTU_RS04150 (TERTU_0946) - 994527..995405 (+) 879 WP_015819226.1 sugar nucleotide-binding protein -
  TERTU_RS04155 (TERTU_0947) fabB 995531..996745 (-) 1215 WP_015818656.1 beta-ketoacyl-ACP synthase I -
  TERTU_RS04160 (TERTU_0948) fabA 996830..997354 (-) 525 WP_015820382.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  TERTU_RS04165 (TERTU_0949) galU 997573..998406 (+) 834 WP_015819798.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17881.73 Da        Isoelectric Point: 5.2405

>NTDB_id=34904 TERTU_RS04145 WP_015818796.1 993964..994455(+) (ssb) [Teredinibacter turnerae T7901]
MATRGVNKVILVGNLGQDPETRYMPSGGAVTNISIATSESWKDKQTGQNQERTEWHRVAFFGRLAEVAGEYLRKGSKVYV
EGSLRTRKWQDQQGQDRFSTEIVASEMQMLDARGAGDGQGYGGYDAPAPQQHQPQAPRQAPAPQQAPPSAPPSMDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=34904 TERTU_RS04145 WP_015818796.1 993964..994455(+) (ssb) [Teredinibacter turnerae T7901]
GTGGCTACGAGAGGTGTTAACAAGGTAATTTTGGTTGGTAATCTCGGCCAGGACCCGGAAACGCGCTATATGCCTTCTGG
CGGCGCGGTAACGAATATCAGTATCGCGACTTCCGAGAGCTGGAAGGATAAGCAAACAGGTCAGAATCAGGAGCGAACAG
AGTGGCATCGCGTTGCATTCTTTGGTCGCCTGGCGGAGGTCGCAGGTGAATATCTGCGCAAAGGCAGCAAAGTTTATGTA
GAAGGTTCACTGCGTACCCGAAAGTGGCAGGATCAGCAGGGCCAGGATCGGTTTTCCACGGAAATTGTTGCAAGTGAAAT
GCAAATGTTAGACGCGCGTGGCGCTGGCGATGGGCAGGGATATGGCGGCTACGATGCTCCCGCACCACAACAGCATCAGC
CACAGGCGCCTCGGCAGGCTCCGGCACCGCAGCAAGCGCCACCTTCTGCGCCACCGTCAATGGACAGCTTTGACGACGAT
ATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.326

100

0.681
  ssb Glaesserella parasuis strain SC1401

54.891

100

0.62
  ssb Neisseria meningitidis MC58

47.977

100

0.509
  ssb Neisseria gonorrhoeae MS11

47.977

100

0.509

Multiple sequence alignment