Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJE04_RS05905 Genome accession   NZ_CP045961
Coordinates   1093844..1094368 (-) Length   174 a.a.
NCBI ID   WP_002212976.1    Uniprot ID   P66849
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1088844..1099368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS05895 (GJE04_05895) fumC 1090943..1092331 (+) 1389 WP_002219054.1 class II fumarate hydratase -
  GJE04_RS05900 (GJE04_05900) - 1092396..1093319 (-) 924 WP_002240631.1 DMT family transporter -
  GJE04_RS05905 (GJE04_05905) ssb 1093844..1094368 (-) 525 WP_002212976.1 single-stranded DNA-binding protein Machinery gene
  GJE04_RS05910 (GJE04_05910) - 1094372..1095754 (-) 1383 WP_002240632.1 MFS transporter -
  GJE04_RS05915 (GJE04_05915) - 1095865..1096488 (-) 624 WP_002212974.1 lytic transglycosylase domain-containing protein -
  GJE04_RS11770 - 1096548..1096787 (+) 240 WP_173026321.1 hypothetical protein -
  GJE04_RS12040 - 1097178..1097596 (-) 419 Protein_1107 hypothetical protein -
  GJE04_RS05935 (GJE04_05935) - 1097633..1098124 (-) 492 WP_002219860.1 REP-associated tyrosine transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19452.65 Da        Isoelectric Point: 5.8354

>NTDB_id=349003 GJE04_RS05905 WP_002212976.1 1093844..1094368(-) (ssb) [Neisseria meningitidis strain AUSMDU00010537]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=349003 GJE04_RS05905 WP_002212976.1 1093844..1094368(-) (ssb) [Neisseria meningitidis strain AUSMDU00010537]
ATGTCATTGAACAAAGTCATCCTCATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCGGT
TTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGTGTAGAGCGTACTGAGTGGCACAACA
TCACCATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAACGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGTGCGCCTTACGAGGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCGC
AGCAAAGCCGGCAGCCCGCCTCCGACGCGCCGTCCCATCCCCAAGAAGCACCAGCCGCGCCGCGCCGCCAACCCGTGCCT
GCCGCCGCCCCGGTCGAGGACATTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66849

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

100

100

1
  ssb Neisseria gonorrhoeae MS11

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.956

100

0.46