Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   METD_RS13425 Genome accession   NC_012988
Coordinates   2939721..2940287 (-) Length   188 a.a.
NCBI ID   WP_015822720.1    Uniprot ID   C7CKC8
Organism   Methylorubrum extorquens DM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2934721..2945287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METD_RS13405 (METD_I3015) - 2934859..2937039 (-) 2181 WP_015822718.1 TonB-dependent siderophore receptor -
  METD_RS13410 (METD_I3016) panC 2937374..2938231 (-) 858 WP_015822719.1 pantoate--beta-alanine ligase -
  METD_RS13415 (METD_I3017) - 2938307..2938666 (-) 360 WP_012253692.1 hypothetical protein -
  METD_RS13420 (METD_I3018) - 2938739..2939344 (-) 606 WP_003603578.1 XRE family transcriptional regulator -
  METD_RS13425 (METD_I3020) ssb 2939721..2940287 (-) 567 WP_015822720.1 single-stranded DNA-binding protein Machinery gene
  METD_RS13430 (METD_I3021) - 2940592..2941608 (-) 1017 WP_015822721.1 NADP-dependent oxidoreductase -
  METD_RS13435 (METD_I3022) - 2941701..2942108 (+) 408 WP_012253695.1 DUF4174 domain-containing protein -
  METD_RS13440 (METD_I3023) - 2942161..2942700 (-) 540 WP_015822722.1 hypothetical protein -
  METD_RS13445 (METD_I3024) - 2942930..2943703 (+) 774 WP_041357767.1 phosphodiester glycosidase family protein -
  METD_RS13450 (METD_I3025) - 2943862..2944980 (-) 1119 WP_012253698.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20071.87 Da        Isoelectric Point: 6.0203

>NTDB_id=34895 METD_RS13425 WP_015822720.1 2939721..2940287(-) (ssb) [Methylorubrum extorquens DM4]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGVEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=34895 METD_RS13425 WP_015822720.1 2939721..2940287(-) (ssb) [Methylorubrum extorquens DM4]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAATATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAGTCGGGCGTGGAGAAGTATACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGTGGCGGTGGCGGCGGCGACTTCGCGGGCGAGGACGAGGGTGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGCGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGCGGCGGCGGCGATCGCCGGCCCTCCTCGGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACATCCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C7CKC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.692

100

0.495
  ssb Vibrio cholerae strain A1552

48.913

97.872

0.479
  ssb Neisseria gonorrhoeae MS11

41.622

98.404

0.41
  ssb Neisseria meningitidis MC58

41.081

98.404

0.404

Multiple sequence alignment