Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WN16_RS05250 Genome accession   NZ_CP036435
Coordinates   1070550..1071074 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. ABFQG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1065550..1076074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN16_RS05230 (WN16_05355) aphA 1066163..1066876 (+) 714 WP_044702294.1 acid phosphatase AphA -
  WN16_RS05235 (WN16_05360) - 1067004..1067360 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  WN16_RS05240 (WN16_05365) uvrA 1067476..1070298 (-) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  WN16_RS05250 (WN16_05370) ssb 1070550..1071074 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WN16_RS05255 (WN16_05375) - 1071141..1071422 (-) 282 WP_003031727.1 YjcB family protein -
  WN16_RS05260 (WN16_05380) - 1071976..1073562 (+) 1587 WP_003841054.1 EAL domain-containing protein -
  WN16_RS05265 (WN16_05385) soxS 1073565..1073888 (-) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  WN16_RS05270 (WN16_05390) soxR 1073975..1074433 (+) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=348885 WN16_RS05250 WP_003826621.1 1070550..1071074(+) (ssb) [Citrobacter sp. ABFQG]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=348885 WN16_RS05250 WP_003826621.1 1070550..1071074(+) (ssb) [Citrobacter sp. ABFQG]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment