Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   EYZ66_RS10645 Genome accession   NZ_CP036423
Coordinates   2378976..2379833 (+) Length   285 a.a.
NCBI ID   WP_009575689.1    Uniprot ID   -
Organism   Aequoribacter fuscus strain IMCC3088     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2373976..2384833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYZ66_RS10630 (EYZ66_10630) - 2375276..2375743 (-) 468 WP_040816565.1 pilin -
  EYZ66_RS10635 (EYZ66_10635) pilB 2375995..2377731 (+) 1737 WP_009575691.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYZ66_RS10640 (EYZ66_10640) pilC 2377746..2378957 (+) 1212 WP_160195670.1 type II secretion system F family protein Machinery gene
  EYZ66_RS10645 (EYZ66_10645) pilD 2378976..2379833 (+) 858 WP_009575689.1 A24 family peptidase Machinery gene
  EYZ66_RS10650 (EYZ66_10650) coaE 2379841..2380431 (+) 591 WP_009575688.1 dephospho-CoA kinase -
  EYZ66_RS10655 (EYZ66_10655) mutT 2380414..2380836 (-) 423 WP_009575687.1 8-oxo-dGTP diphosphatase MutT -
  EYZ66_RS10660 (EYZ66_10660) argJ 2380817..2382013 (-) 1197 WP_009575686.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  EYZ66_RS10665 (EYZ66_10665) secA 2382018..2384723 (-) 2706 WP_009575685.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31310.16 Da        Isoelectric Point: 5.2048

>NTDB_id=348850 EYZ66_RS10645 WP_009575689.1 2378976..2379833(+) (pilD) [Aequoribacter fuscus strain IMCC3088]
MDLHQLAAEPALWYPLVFVLGAVVGSFLNVVILRLPKIMQQQWRSECEAFLELESTQTGKPLSLSHPPSTCPSCNARIKP
WQNIPILSWLLLRGKCANCSISISARYPIIEFMTGLLSVVVAMQFAYDWGLLLALVTTWCLVALTVIDAETQLLPDDITL
PLLWLGLVANAFGVFTDLPSALWGAVFGYGILWSIYWIFKLTTGKEGMGYGDFKLLGALGALLGWQALPMIILMSSAVGA
IIGTALMATKRLDREQPMPFGPYLAIAGWLSMVFGDTITSFSPYM

Nucleotide


Download         Length: 858 bp        

>NTDB_id=348850 EYZ66_RS10645 WP_009575689.1 2378976..2379833(+) (pilD) [Aequoribacter fuscus strain IMCC3088]
ATGGACCTACACCAACTCGCCGCCGAGCCCGCGCTGTGGTACCCCTTAGTTTTTGTGCTGGGTGCCGTAGTCGGTAGCTT
TTTAAATGTAGTCATACTACGGCTACCTAAAATCATGCAGCAGCAGTGGCGTAGCGAATGCGAAGCCTTCTTGGAGCTTG
AGTCCACGCAAACTGGCAAGCCGCTGAGCTTATCGCACCCACCTTCTACCTGCCCAAGCTGCAACGCTCGCATCAAGCCC
TGGCAAAACATACCCATCCTGAGCTGGTTATTGCTCCGCGGTAAATGCGCAAACTGCAGCATCAGTATCAGCGCACGCTA
CCCCATCATCGAGTTTATGACAGGCCTATTGAGCGTTGTGGTGGCCATGCAATTCGCCTACGACTGGGGGTTGTTACTCG
CGCTTGTCACCACTTGGTGCCTTGTTGCGCTCACCGTCATCGACGCCGAGACTCAGCTCCTCCCTGATGACATTACCCTA
CCCCTGCTATGGCTTGGTTTAGTCGCCAATGCATTCGGCGTATTCACCGACCTACCCTCCGCTCTTTGGGGCGCCGTGTT
TGGTTACGGCATTTTGTGGAGTATTTATTGGATATTTAAGCTGACGACCGGCAAAGAAGGCATGGGCTACGGCGACTTCA
AATTGCTGGGAGCCTTGGGCGCCCTGCTGGGGTGGCAAGCTCTACCGATGATCATACTGATGTCGTCCGCGGTGGGCGCA
ATCATTGGCACAGCCCTGATGGCCACCAAACGATTAGACCGCGAGCAACCCATGCCCTTCGGACCTTATTTGGCCATTGC
CGGGTGGCTATCGATGGTGTTTGGCGATACCATCACCTCCTTTTCACCCTACATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.015

95.789

0.498
  pilD Vibrio campbellii strain DS40M4

50.909

96.491

0.491
  pilD Acinetobacter nosocomialis M2

51.504

93.333

0.481
  pilD Acinetobacter baumannii D1279779

51.504

93.333

0.481
  pilD Neisseria gonorrhoeae MS11

47.925

92.982

0.446

Multiple sequence alignment