Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EYZ66_RS02035 Genome accession   NZ_CP036423
Coordinates   447864..448355 (+) Length   163 a.a.
NCBI ID   WP_009574410.1    Uniprot ID   -
Organism   Aequoribacter fuscus strain IMCC3088     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 442864..453355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYZ66_RS02020 (EYZ66_02015) rplQ 443132..443527 (+) 396 WP_009574406.1 50S ribosomal protein L17 -
  EYZ66_RS02025 (EYZ66_02020) uvrA 443635..446469 (-) 2835 WP_009574408.1 excinuclease ABC subunit UvrA -
  EYZ66_RS02030 (EYZ66_02025) - 446556..447773 (+) 1218 WP_235714603.1 MFS transporter -
  EYZ66_RS02035 (EYZ66_02030) ssb 447864..448355 (+) 492 WP_009574410.1 single-stranded DNA-binding protein Machinery gene
  EYZ66_RS02040 (EYZ66_02035) - 448396..449271 (+) 876 WP_040815730.1 sugar nucleotide-binding protein -
  EYZ66_RS02045 (EYZ66_02040) moaB 449264..449782 (+) 519 WP_009574412.1 molybdenum cofactor biosynthesis protein B -
  EYZ66_RS02050 (EYZ66_02045) glp 449779..450978 (+) 1200 WP_009574413.1 gephyrin-like molybdotransferase Glp -
  EYZ66_RS02055 (EYZ66_02050) fabB 450975..452198 (-) 1224 WP_009574414.1 beta-ketoacyl-ACP synthase I -
  EYZ66_RS02060 (EYZ66_02055) fabA 452202..452717 (-) 516 WP_009574415.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17574.49 Da        Isoelectric Point: 4.9562

>NTDB_id=348840 EYZ66_RS02035 WP_009574410.1 447864..448355(+) (ssb) [Aequoribacter fuscus strain IMCC3088]
MATRGVNKVILVGNLGNDPETRFMPSGGAVTNVSLATSETWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYV
EGALRTRKWQDQSGADRYSTEIVASEMQMLDSRGDGMGGGMSGGMSGGNQSQGYAPRQAAAPAPASPSQPPADFPDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=348840 EYZ66_RS02035 WP_009574410.1 447864..448355(+) (ssb) [Aequoribacter fuscus strain IMCC3088]
ATGGCGACACGTGGCGTAAATAAGGTAATTTTGGTGGGCAATCTGGGTAATGACCCTGAGACCCGATTTATGCCCTCCGG
TGGCGCGGTTACGAACGTCAGTCTTGCTACCTCAGAAACTTGGAAGGATAAGCAAACCGGACAACCACAAGAGCGTACCG
AATGGCACCGAGTCGTATTTTTTAACCGCCTAGCTGAAATCGCGGGCGAGTATCTTAAAAAGGGCTCTAAAGTATACGTC
GAGGGCGCATTGCGTACTCGAAAATGGCAAGATCAATCGGGCGCCGATCGATACTCCACAGAAATTGTCGCCAGCGAGAT
GCAAATGCTTGATAGTCGTGGTGACGGAATGGGTGGAGGTATGAGTGGAGGTATGAGCGGCGGCAACCAGAGCCAAGGCT
ATGCGCCTCGCCAGGCCGCTGCGCCAGCGCCTGCTTCGCCTTCACAACCGCCTGCAGATTTCCCTGATTTCGACGACGAT
ATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.626
  ssb Glaesserella parasuis strain SC1401

52.941

100

0.607
  ssb Neisseria gonorrhoeae MS11

48.555

100

0.515
  ssb Neisseria meningitidis MC58

47.399

100

0.503

Multiple sequence alignment