Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EYF70_RS26305 Genome accession   NZ_CP036401
Coordinates   6322797..6324272 (-) Length   491 a.a.
NCBI ID   WP_131148024.1    Uniprot ID   A0A411X4U1
Organism   Pseudoduganella albidiflava strain DSM 17472     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6317797..6329272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYF70_RS26285 (EYF70_26285) rapZ 6318617..6319480 (+) 864 WP_131148020.1 RNase adapter RapZ -
  EYF70_RS26290 (EYF70_26290) - 6320022..6321038 (-) 1017 WP_131148021.1 amidohydrolase family protein -
  EYF70_RS26295 (EYF70_26295) - 6321046..6322128 (-) 1083 WP_131148022.1 enoyl-CoA hydratase/isomerase family protein -
  EYF70_RS26300 (EYF70_26300) hpf 6322300..6322656 (-) 357 WP_131148023.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EYF70_RS26305 (EYF70_26305) rpoN/rpoN1 6322797..6324272 (-) 1476 WP_131148024.1 RNA polymerase factor sigma-54 Machinery gene
  EYF70_RS26310 (EYF70_26310) lptB 6324311..6325072 (-) 762 WP_131148025.1 LPS export ABC transporter ATP-binding protein -
  EYF70_RS26315 (EYF70_26315) lptA 6325073..6325723 (-) 651 WP_307722081.1 lipopolysaccharide transport periplasmic protein LptA -
  EYF70_RS26320 (EYF70_26320) lptC 6325728..6326321 (-) 594 WP_229420572.1 LPS export ABC transporter periplasmic protein LptC -
  EYF70_RS26325 (EYF70_26325) - 6326561..6327100 (-) 540 WP_131148026.1 HAD family hydrolase -
  EYF70_RS26330 (EYF70_26330) - 6327100..6328122 (-) 1023 WP_371861682.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 54589.06 Da        Isoelectric Point: 5.0407

>NTDB_id=348790 EYF70_RS26305 WP_131148024.1 6322797..6324272(-) (rpoN/rpoN1) [Pseudoduganella albidiflava strain DSM 17472]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSVRLLADGAINTTQGTGEAPPEGG
PPQDTPAAPEPEPFDGGEGEGLDTGAGDTDWSSAGSSKGPDDDDSRPQLEASHRSLREHLMEQMRVTVLEARDRGLVELI
IDALDDNGYLEESLEEIHERMPEELEIEIGELRTALNLLQSFDPPGIGARNASECLALQIRRMPGVPLVTRRMALCIVEK
HLQWFAQRDFNKLKKALDCDDEDLREAQAVIRQCNPHPGAAFAADVSDYVVPDVVVKRGRNGWIVTLNNDVMPRLRVNAL
YASLLKQGKGETQMNAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVT
TQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQFTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREAL
KIPPVSLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=348790 EYF70_RS26305 WP_131148024.1 6322797..6324272(-) (rpoN/rpoN1) [Pseudoduganella albidiflava strain DSM 17472]
ATGAAACAGTCTTTGCAACTGCGTACTTCCCAGCACCTCGCGCTGACGCCGCAATTGCAGCAGTCGATCCGGCTGCTGCA
ATTGTCCACGCTGGAGCTGCACCAGGAACTGGAACAGCTGCTGACCGATAACCCGCTGCTGGAGCGGCTCGACGATCCGC
TCGACCGCTCGGTGCGCCTGCTGGCCGATGGCGCGATCAACACGACGCAGGGGACCGGCGAGGCGCCACCGGAAGGCGGG
CCGCCGCAGGATACGCCCGCCGCGCCGGAACCCGAGCCGTTCGATGGCGGCGAAGGCGAAGGCCTCGATACCGGCGCCGG
CGATACCGACTGGAGCAGTGCCGGCAGCAGCAAGGGCCCGGACGACGACGATTCCCGTCCCCAGCTGGAAGCCAGCCACC
GCAGCCTGCGCGAGCACCTGATGGAGCAGATGCGCGTGACCGTGCTGGAGGCGCGCGACCGGGGCCTGGTGGAACTGATC
ATCGATGCGCTCGACGATAACGGCTACCTCGAGGAAAGCCTGGAAGAGATCCACGAGCGCATGCCGGAAGAGCTGGAAAT
CGAGATCGGCGAATTGCGCACCGCGCTCAACCTGCTGCAGAGCTTCGATCCGCCGGGCATCGGCGCGCGCAACGCGTCCG
AGTGCCTGGCGCTGCAGATCCGGCGCATGCCCGGCGTGCCGCTGGTCACGCGGCGCATGGCGCTGTGCATCGTTGAAAAA
CACTTGCAGTGGTTTGCCCAGCGCGACTTCAACAAGCTCAAGAAGGCGCTCGACTGCGACGACGAAGACCTGCGCGAAGC
ACAGGCCGTGATCCGCCAATGCAATCCGCATCCGGGCGCCGCCTTCGCGGCCGACGTGTCAGACTACGTGGTACCGGATG
TGGTGGTAAAGCGGGGGCGCAACGGCTGGATCGTCACGTTGAACAACGACGTGATGCCCCGCCTGCGTGTCAATGCGCTG
TACGCCAGCCTGCTCAAGCAGGGCAAGGGCGAAACGCAGATGAATGCACAGCTGCAAGAAGCAAAGTGGCTGATCAAGAA
TATGCGCCAGCGCTTCGACACGATCCTCCGCGTGGCGCAGGCCATCGTCGAACGGCAGAAGAACTTTTTCTCGCATGGCG
CGGTGGCAATGAGGCCCCTTGTGTTGCGTGAAATAGCTGATACACTGGGCCTACACGAGAGTACTATCTCTCGGGTAACA
ACTCAAAAATATATGCTGACGCCGCATGGCATGTTTGAGTTGAAGTACTTTTTTGGCAGCCACGTTGCAACCGAAGCTGG
CGGGGAAGCATCCTCGACTGCGATACGGGCGCTGATCGTGCAATTCACAGGAGCCGAAGACCCGAAGAACCCTTTATCCG
ACAGTAAGATTGCGGACATGCTGGGTGAACAAGGCATGGTGATTGCGCGACGCACTGTTGCCAAATATCGCGAAGCATTG
AAAATTCCCCCGGTCAGCCTCCGCAAATCGCTATAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-321)

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-489)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.921

100

0.615

Multiple sequence alignment