Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HBAL_RS07090 Genome accession   NC_012982
Coordinates   1484658..1485134 (+) Length   158 a.a.
NCBI ID   WP_015827259.1    Uniprot ID   C6XJ14
Organism   Hirschia baltica ATCC 49814     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1479658..1490134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBAL_RS07080 (Hbal_1416) - 1480296..1481213 (+) 918 WP_015827257.1 hypothetical protein -
  HBAL_RS07085 (Hbal_1417) uvrA 1481257..1484310 (-) 3054 WP_015827258.1 excinuclease ABC subunit UvrA -
  HBAL_RS07090 (Hbal_1418) ssb 1484658..1485134 (+) 477 WP_015827259.1 single-stranded DNA-binding protein Machinery gene
  HBAL_RS07095 (Hbal_1419) gyrA 1485478..1488423 (+) 2946 WP_015827260.1 DNA gyrase subunit A -
  HBAL_RS07100 (Hbal_1420) coaD 1488486..1488980 (+) 495 WP_015827261.1 pantetheine-phosphate adenylyltransferase -
  HBAL_RS07105 (Hbal_1421) - 1488994..1489875 (+) 882 WP_015827262.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17434.22 Da        Isoelectric Point: 5.0801

>NTDB_id=34853 HBAL_RS07090 WP_015827259.1 1484658..1485134(+) (ssb) [Hirschia baltica ATCC 49814]
MAGSVNKVILVGNLGRDPEIRQFPNGGSVASFTVATSESWKDRNSGERKEKTEWHRVAVFSEGLVKIVERYVKKGSKVYI
EGQLETRKWTDNQGQEKYTTEVVLRNFGSTLTMLDGRDGPSGGRGVSEDGGSYGDSSPRQVDGPREDFSADLNDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=34853 HBAL_RS07090 WP_015827259.1 1484658..1485134(+) (ssb) [Hirschia baltica ATCC 49814]
ATGGCCGGATCAGTAAATAAAGTTATCCTAGTGGGCAATCTGGGGCGAGACCCAGAAATACGCCAATTCCCAAATGGTGG
CTCTGTGGCCAGTTTTACTGTGGCGACGTCTGAAAGCTGGAAAGACCGCAATTCCGGTGAACGAAAAGAAAAAACAGAGT
GGCACCGCGTGGCTGTTTTCTCTGAAGGTTTGGTGAAAATCGTCGAGCGCTATGTTAAAAAGGGCTCTAAGGTTTATATT
GAAGGCCAGCTTGAAACCCGCAAATGGACTGATAACCAAGGTCAAGAAAAATACACAACTGAAGTTGTTTTGCGTAATTT
TGGTTCAACGCTGACAATGCTGGATGGTCGCGATGGGCCAAGCGGTGGTCGCGGCGTGAGTGAAGACGGTGGAAGTTATG
GTGATAGTTCACCGCGTCAAGTTGATGGCCCACGCGAAGATTTCTCAGCTGACCTGAACGACGAAATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6XJ14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.243

100

0.506
  ssb Glaesserella parasuis strain SC1401

51.408

89.873

0.462
  ssb Neisseria meningitidis MC58

37.989

100

0.43
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.43

Multiple sequence alignment