Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GIX96_RS16130 Genome accession   NZ_CP045863
Coordinates   3200600..3201115 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157:H7 strain ATCC 43890     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195600..3206115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIX96_RS16105 (GIX96_16105) ygaZ 3195999..3196736 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  GIX96_RS16110 (GIX96_16110) ygaH 3196726..3197061 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  GIX96_RS16115 (GIX96_16115) emrR 3197152..3197682 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GIX96_RS16120 (GIX96_16120) emrA 3197809..3198981 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GIX96_RS16125 (GIX96_16125) emrB 3198998..3200536 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GIX96_RS16130 (GIX96_16130) luxS 3200600..3201115 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  GIX96_RS16135 (GIX96_16135) gshA 3201265..3202821 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  GIX96_RS16140 (GIX96_16140) yqaA 3202894..3203322 (-) 429 WP_001287450.1 YqaA family protein -
  GIX96_RS16145 (GIX96_16145) yqaB 3203319..3203885 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GIX96_RS16175 (GIX96_16175) csrA 3205113..3205298 (-) 186 WP_046593500.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=348291 GIX96_RS16130 WP_001130215.1 3200600..3201115(-) (luxS) [Escherichia coli O157:H7 strain ATCC 43890]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=348291 GIX96_RS16130 WP_001130215.1 3200600..3201115(-) (luxS) [Escherichia coli O157:H7 strain ATCC 43890]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment