Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   GIJ09_RS07000 Genome accession   NZ_CP045832
Coordinates   1283871..1284344 (-) Length   157 a.a.
NCBI ID   WP_025455985.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278871..1289344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS06975 (GIJ09_06975) yaaA 1279968..1280747 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  GIJ09_RS06980 (GIJ09_06980) dapC 1280903..1282090 (-) 1188 WP_149032485.1 succinyldiaminopimelate transaminase -
  GIJ09_RS06985 (GIJ09_06985) dut 1282168..1282620 (-) 453 WP_010359930.1 dUTP diphosphatase -
  GIJ09_RS06990 (GIJ09_06990) - 1282786..1283496 (+) 711 Protein_1302 AzlC family ABC transporter permease -
  GIJ09_RS06995 (GIJ09_06995) - 1283493..1283801 (+) 309 WP_010359926.1 AzlD family protein -
  GIJ09_RS07000 (GIJ09_07000) pilL 1283871..1284344 (-) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  GIJ09_RS07005 (GIJ09_07005) pilK 1284346..1284957 (-) 612 WP_010359922.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GIJ09_RS07010 (GIJ09_07010) pilJ 1284936..1285868 (-) 933 WP_153707871.1 PilW family protein Machinery gene
  GIJ09_RS07015 (GIJ09_07015) pilV 1285865..1286476 (-) 612 WP_050164991.1 type IV pilus modification protein PilV Regulator
  GIJ09_RS07020 (GIJ09_07020) pilH 1286508..1287173 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GIJ09_RS07025 (GIJ09_07025) dnaB 1287481..1288887 (-) 1407 WP_050164993.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17439.16 Da        Isoelectric Point: 9.7327

>NTDB_id=348224 GIJ09_RS07000 WP_025455985.1 1283871..1284344(-) (pilL) [Neisseria gonorrhoeae strain AUSMDU00010541]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYSVSVRLVNEGKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=348224 GIJ09_RS07000 WP_025455985.1 1283871..1284344(-) (pilL) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGCTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.35

100

0.854