Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   GIJ09_RS07005 Genome accession   NZ_CP045832
Coordinates   1284346..1284957 (-) Length   203 a.a.
NCBI ID   WP_010359922.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279346..1289957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS06975 (GIJ09_06975) yaaA 1279968..1280747 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  GIJ09_RS06980 (GIJ09_06980) dapC 1280903..1282090 (-) 1188 WP_149032485.1 succinyldiaminopimelate transaminase -
  GIJ09_RS06985 (GIJ09_06985) dut 1282168..1282620 (-) 453 WP_010359930.1 dUTP diphosphatase -
  GIJ09_RS06990 (GIJ09_06990) - 1282786..1283496 (+) 711 Protein_1302 AzlC family ABC transporter permease -
  GIJ09_RS06995 (GIJ09_06995) - 1283493..1283801 (+) 309 WP_010359926.1 AzlD family protein -
  GIJ09_RS07000 (GIJ09_07000) pilL 1283871..1284344 (-) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  GIJ09_RS07005 (GIJ09_07005) pilK 1284346..1284957 (-) 612 WP_010359922.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GIJ09_RS07010 (GIJ09_07010) pilJ 1284936..1285868 (-) 933 WP_153707871.1 PilW family protein Machinery gene
  GIJ09_RS07015 (GIJ09_07015) pilV 1285865..1286476 (-) 612 WP_050164991.1 type IV pilus modification protein PilV Regulator
  GIJ09_RS07020 (GIJ09_07020) pilH 1286508..1287173 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GIJ09_RS07025 (GIJ09_07025) dnaB 1287481..1288887 (-) 1407 WP_050164993.1 replicative DNA helicase -
  GIJ09_RS07030 (GIJ09_07030) - 1289051..1289632 (+) 582 WP_003690895.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22082.01 Da        Isoelectric Point: 8.0862

>NTDB_id=348225 GIJ09_RS07005 WP_010359922.1 1284346..1284957(-) (pilK) [Neisseria gonorrhoeae strain AUSMDU00010541]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYNKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=348225 GIJ09_RS07005 WP_010359922.1 1284346..1284957(-) (pilK) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

94.089

100

0.941