Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GIJ09_RS04025 Genome accession   NZ_CP045832
Coordinates   733739..734263 (+) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   B4RKU5
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 728739..739263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS03990 (GIJ09_03990) - 729117..729926 (+) 810 WP_153707862.1 opacity family porin -
  GIJ09_RS03995 (GIJ09_03995) - 729940..730146 (+) 207 WP_050164816.1 hypothetical protein -
  GIJ09_RS04000 (GIJ09_04000) - 730323..730813 (+) 491 Protein_741 REP-associated tyrosine transposase -
  GIJ09_RS04005 (GIJ09_04005) - 730850..731116 (+) 267 Protein_742 transposase -
  GIJ09_RS04015 (GIJ09_04015) - 731618..732241 (+) 624 Protein_743 lytic transglycosylase domain-containing protein -
  GIJ09_RS04020 (GIJ09_04020) - 732353..733735 (+) 1383 WP_153707901.1 MFS transporter -
  GIJ09_RS04025 (GIJ09_04025) ssb 733739..734263 (+) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  GIJ09_RS04030 (GIJ09_04030) - 734636..735559 (+) 924 WP_003699810.1 DMT family transporter -
  GIJ09_RS04035 (GIJ09_04035) fumC 735624..737012 (-) 1389 WP_144917128.1 class II fumarate hydratase -
  GIJ09_RS04040 (GIJ09_04040) recP/tkt 737156..739135 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=348208 GIJ09_RS04025 WP_003688219.1 733739..734263(+) (ssb) [Neisseria gonorrhoeae strain AUSMDU00010541]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=348208 GIJ09_RS04025 WP_003688219.1 733739..734263(+) (ssb) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454