Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EYB51_RS12625 Genome accession   NZ_CP036356
Coordinates   2170650..2171162 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus sp. SYJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2165650..2176162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS12605 rplI 2166859..2167305 (-) 447 WP_000864235.1 50S ribosomal protein L9 -
  EYB51_RS12610 - 2167302..2169275 (-) 1974 WP_087968535.1 DHH family phosphoesterase -
  EYB51_RS12615 - 2169354..2170289 (-) 936 WP_131101220.1 YybS family protein -
  EYB51_RS12620 rpsR 2170371..2170604 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  EYB51_RS12625 ssbA 2170650..2171162 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  EYB51_RS12630 rpsF 2171189..2171479 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  EYB51_RS12635 ychF 2171670..2172770 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  EYB51_RS12640 - 2172886..2173083 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  EYB51_RS12645 - 2173104..2173985 (-) 882 WP_087968537.1 mechanosensitive ion channel family protein -
  EYB51_RS12650 yyaC 2174244..2174840 (+) 597 WP_087968538.1 spore protease YyaC -
  EYB51_RS12655 spo0J 2174861..2175712 (-) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=348157 EYB51_RS12625 WP_000981966.1 2170650..2171162(-) (ssbA) [Bacillus sp. SYJ]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=348157 EYB51_RS12625 WP_000981966.1 2170650..2171162(-) (ssbA) [Bacillus sp. SYJ]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment