Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Pan153_RS12075 Genome accession   NZ_CP036317
Coordinates   3298035..3298514 (-) Length   159 a.a.
NCBI ID   WP_145455954.1    Uniprot ID   A0A518FNB6
Organism   Gimesia panareensis strain Pan153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3293035..3303514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pan153_RS12060 (Pan153_25050) - 3293804..3295783 (-) 1980 WP_145455950.1 hypothetical protein -
  Pan153_RS12065 (Pan153_25060) dnaB 3295832..3297259 (-) 1428 WP_145455952.1 replicative DNA helicase -
  Pan153_RS12070 (Pan153_25070) rplI 3297442..3297948 (-) 507 WP_145105208.1 50S ribosomal protein L9 -
  Pan153_RS12075 (Pan153_25080) ssb 3298035..3298514 (-) 480 WP_145455954.1 single-stranded DNA-binding protein Machinery gene
  Pan153_RS12080 (Pan153_25090) rpsF 3298600..3299019 (-) 420 WP_145105201.1 30S ribosomal protein S6 -
  Pan153_RS12085 (Pan153_25100) pth 3299144..3299710 (-) 567 WP_145105198.1 aminoacyl-tRNA hydrolase -
  Pan153_RS12090 (Pan153_25110) - 3299770..3300408 (-) 639 WP_145105195.1 50S ribosomal protein L25 -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16751.48 Da        Isoelectric Point: 4.9628

>NTDB_id=348001 Pan153_RS12075 WP_145455954.1 3298035..3298514(-) (ssb) [Gimesia panareensis strain Pan153]
MASFNKVILVGNLTRDPQVRYTPGGSAVAEIGLAVNRSWFDKNSNSRKEETTFVDVTLWGRTAEVASEYLTKGRSVLIEG
RLQLDQWDDKESGQKRSKLKVVGENMTMLGGRGESGGGAPGGGGYGARGGSAPSQGGSSSPADSFYDSPGGMPDDDVPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=348001 Pan153_RS12075 WP_145455954.1 3298035..3298514(-) (ssb) [Gimesia panareensis strain Pan153]
ATGGCCAGTTTCAACAAAGTCATCCTGGTAGGAAATCTGACTCGCGATCCACAGGTGCGTTACACGCCTGGAGGGAGTGC
GGTTGCGGAAATTGGTCTGGCAGTGAATCGGAGCTGGTTTGACAAGAATTCCAATTCCCGGAAGGAAGAAACCACCTTCG
TCGATGTCACTCTCTGGGGGCGTACTGCGGAAGTGGCCAGCGAGTATCTGACCAAAGGGCGTTCGGTCCTGATCGAAGGT
CGTCTGCAACTGGATCAGTGGGACGACAAAGAATCGGGCCAGAAACGCAGCAAGCTGAAAGTGGTTGGCGAAAACATGAC
CATGCTGGGGGGACGCGGCGAATCAGGAGGCGGTGCTCCCGGTGGCGGCGGCTACGGGGCACGTGGCGGCAGCGCACCAT
CACAGGGCGGTTCGTCCAGCCCTGCTGATTCCTTTTATGATTCACCAGGCGGAATGCCCGATGACGACGTGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A518FNB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.629

100

0.522
  ssb Neisseria meningitidis MC58

38.286

100

0.421
  ssb Neisseria gonorrhoeae MS11

38.286

100

0.421
  ssb Glaesserella parasuis strain SC1401

41.135

88.679

0.365

Multiple sequence alignment