Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EYC56_RS07950 Genome accession   NZ_CP036255
Coordinates   1642972..1643508 (+) Length   178 a.a.
NCBI ID   WP_131078502.1    Uniprot ID   A0AAJ6GZY9
Organism   Xanthomonas oryzae strain BB151-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1644127..1645230 1642972..1643508 flank 619


Gene organization within MGE regions


Location: 1642972..1645230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS07950 (EYC56_07950) ssb 1642972..1643508 (+) 537 WP_131078502.1 single-stranded DNA-binding protein Machinery gene
  EYC56_RS24495 - 1643736..1643969 (-) 234 WP_165480737.1 hypothetical protein -
  EYC56_RS07960 (EYC56_07960) - 1644187..1645230 (+) 1044 WP_242629075.1 IS3 family transposase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19152.05 Da        Isoelectric Point: 5.3258

>NTDB_id=347702 EYC56_RS07950 WP_131078502.1 1642972..1643508(+) (ssb) [Xanthomonas oryzae strain BB151-3]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGERPQRSQAPRQQQGGGGGQGGGGYGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=347702 EYC56_RS07950 WP_131078502.1 1642972..1643508(+) (ssb) [Xanthomonas oryzae strain BB151-3]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
GAGCTGCGCTACGACAAATACACCGGTCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGGGAAGGCGGTGGTGGCGGCATGGGCGGCGAGCGCCCGCAGCGCTCGCAAGCCCCGCGCCAGCAGC
AGGGCGGTGGTGGCGGGCAGGGTGGTGGTGGATACGGTGGCGGTGGTCAGGACTATGCGCCGCGGCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.388

100

0.489
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.472
  ssb Neisseria meningitidis MC58

46.067

100

0.461
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.461

Multiple sequence alignment