Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EYC54_RS15750 Genome accession   NZ_CP036252
Coordinates   3359305..3359841 (-) Length   178 a.a.
NCBI ID   WP_131078502.1    Uniprot ID   A0AAJ6GZY9
Organism   Xanthomonas oryzae strain NJ611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3354305..3364841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC54_RS15735 (EYC54_15735) paoA 3355167..3355817 (-) 651 WP_131078501.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  EYC54_RS15740 (EYC54_15740) - 3356247..3357244 (-) 998 Protein_2856 NAD(P)-dependent alcohol dehydrogenase -
  EYC54_RS15745 (EYC54_15745) - 3357514..3359022 (+) 1509 WP_207306903.1 sensor domain-containing diguanylate cyclase -
  EYC54_RS15750 (EYC54_15750) ssb 3359305..3359841 (-) 537 WP_131078502.1 single-stranded DNA-binding protein Machinery gene
  EYC54_RS15755 (EYC54_15755) - 3360117..3361115 (+) 999 WP_131074837.1 polyprenyl synthetase family protein -
  EYC54_RS15760 (EYC54_15760) - 3361300..3362100 (-) 801 WP_131074836.1 dienelactone hydrolase family protein -
  EYC54_RS15770 (EYC54_15770) murD 3362417..3363823 (-) 1407 WP_131078503.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19152.05 Da        Isoelectric Point: 5.3258

>NTDB_id=347655 EYC54_RS15750 WP_131078502.1 3359305..3359841(-) (ssb) [Xanthomonas oryzae strain NJ611]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGERPQRSQAPRQQQGGGGGQGGGGYGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=347655 EYC54_RS15750 WP_131078502.1 3359305..3359841(-) (ssb) [Xanthomonas oryzae strain NJ611]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
GAGCTGCGCTACGACAAATACACCGGTCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGTGGCCGTGGGGAAGGCGGTGGTGGCGGCATGGGCGGCGAGCGCCCGCAGCGCTCGCAAGCCCCGCGCCAGCAGC
AGGGCGGTGGTGGCGGGCAGGGTGGTGGTGGATACGGTGGCGGTGGTCAGGACTATGCGCCGCGGCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.388

100

0.489
  ssb Glaesserella parasuis strain SC1401

45.652

100

0.472
  ssb Neisseria meningitidis MC58

46.067

100

0.461
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.461

Multiple sequence alignment