Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EYC54_RS05280 Genome accession   NZ_CP036252
Coordinates   1083905..1084963 (+) Length   352 a.a.
NCBI ID   WP_053502376.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NJ611     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1078905..1089963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC54_RS05270 (EYC54_05270) - 1080288..1080938 (-) 651 WP_131074690.1 hypothetical protein -
  EYC54_RS05275 (EYC54_05275) - 1081261..1083690 (-) 2430 WP_165480522.1 penicillin-binding protein 1A -
  EYC54_RS05280 (EYC54_05280) comM 1083905..1084963 (+) 1059 WP_053502376.1 pilus assembly protein PilM Machinery gene
  EYC54_RS05285 (EYC54_05285) - 1084963..1085745 (+) 783 WP_131074692.1 PilN domain-containing protein -
  EYC54_RS05290 (EYC54_05290) - 1085742..1086407 (+) 666 WP_053502377.1 type 4a pilus biogenesis protein PilO -
  EYC54_RS05295 (EYC54_05295) - 1086404..1086937 (+) 534 WP_011257996.1 pilus assembly protein PilP -
  EYC54_RS05300 (EYC54_05300) - 1086957..1088909 (+) 1953 WP_131074693.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37624.24 Da        Isoelectric Point: 4.3924

>NTDB_id=347645 EYC54_RS05280 WP_053502376.1 1083905..1084963(+) (comM) [Xanthomonas oryzae strain NJ611]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=347645 EYC54_RS05280 WP_053502376.1 1083905..1084963(+) (comM) [Xanthomonas oryzae strain NJ611]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGGTCCGGCAGCAAGGCCAAGAATGCGGCCGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTTGGGGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment