Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EYR27_RS01220 Genome accession   NZ_CP036251
Coordinates   229525..230583 (+) Length   352 a.a.
NCBI ID   WP_033007654.1    Uniprot ID   A0AAP0ZJA0
Organism   Xanthomonas oryzae strain X11-5A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 224525..235583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR27_RS01210 (EYR27_01210) - 225909..226559 (-) 651 WP_011407794.1 hypothetical protein -
  EYR27_RS01215 (EYR27_01215) - 226881..229310 (-) 2430 WP_053507321.1 penicillin-binding protein 1A -
  EYR27_RS01220 (EYR27_01220) comM 229525..230583 (+) 1059 WP_033007654.1 pilus assembly protein PilM Machinery gene
  EYR27_RS01225 (EYR27_01225) - 230583..231365 (+) 783 WP_019302816.1 PilN domain-containing protein -
  EYR27_RS01230 (EYR27_01230) - 231362..232027 (+) 666 WP_019302815.1 type 4a pilus biogenesis protein PilO -
  EYR27_RS01235 (EYR27_01235) - 232024..232557 (+) 534 WP_019302814.1 pilus assembly protein PilP -
  EYR27_RS01240 (EYR27_01240) - 232577..234535 (+) 1959 WP_019302813.1 type IV pilus secretin PilQ family protein -
  EYR27_RS01245 (EYR27_01245) - 234739..235553 (+) 815 Protein_224 transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37686.33 Da        Isoelectric Point: 4.3924

>NTDB_id=347625 EYR27_RS01220 WP_033007654.1 229525..230583(+) (comM) [Xanthomonas oryzae strain X11-5A]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYTVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=347625 EYR27_RS01220 WP_033007654.1 229525..230583(+) (comM) [Xanthomonas oryzae strain X11-5A]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACACCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTCCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGTATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment