Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECB_RS20915 Genome accession   NC_012967
Coordinates   4253058..4253594 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli B str. REL606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4229635..4262008 4253058..4253594 within 0


Gene organization within MGE regions


Location: 4229635..4262008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECB_RS20805 (ECB_03910) - 4229635..4231215 (+) 1581 Protein_3996 SopA family protein -
  ECB_RS20810 (ECB_03911) ubiC 4231438..4231935 (+) 498 WP_001326644.1 chorismate lyase -
  ECB_RS20815 (ECB_03912) ubiA 4231948..4232820 (+) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  ECB_RS20820 (ECB_03913) plsB 4232975..4235398 (-) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  ECB_RS20825 (ECB_03914) dgkA 4235569..4235937 (+) 369 WP_000002907.1 diacylglycerol kinase -
  ECB_RS20830 (ECB_03915) lexA 4236047..4236655 (+) 609 WP_000646078.1 transcriptional repressor LexA -
  ECB_RS20835 (ECB_03916) dinF 4236728..4238053 (+) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  ECB_RS20840 (ECB_03917) yjbJ 4238169..4238378 (+) 210 WP_001030593.1 CsbD family protein -
  ECB_RS20845 (ECB_03918) zur 4238420..4238935 (-) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  ECB_RS26195 (ECB_03919) yjbL 4239253..4239507 (+) 255 WP_000912571.1 protein YjbL -
  ECB_RS20855 (ECB_03920) yjbM 4239498..4240238 (+) 741 WP_000478761.1 DUF2713 domain-containing protein -
  ECB_RS20860 (ECB_03921) dusA 4240601..4241638 (+) 1038 WP_001298868.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ECB_RS20865 (ECB_03922) pspG 4241772..4242014 (+) 243 WP_000891404.1 envelope stress response protein PspG -
  ECB_RS20870 (ECB_03923) qorA 4242180..4243163 (-) 984 WP_000235508.1 quinone oxidoreductase -
  ECB_RS20875 (ECB_03924) dnaB 4243246..4244661 (+) 1416 WP_000918363.1 replicative DNA helicase -
  ECB_RS20880 (ECB_03925) alr 4244714..4245793 (+) 1080 WP_001147328.1 alanine racemase -
  ECB_RS20885 (ECB_03926) tyrB 4246046..4247239 (+) 1194 WP_000486985.1 aromatic amino acid transaminase -
  ECB_RS25250 yjbS 4247741..4247944 (-) 204 WP_001321562.1 protein YjbS -
  ECB_RS20895 (ECB_03927) aphA 4248346..4249059 (+) 714 WP_015833309.1 acid phosphatase AphA -
  ECB_RS20900 (ECB_03928) yjbQ 4249170..4249586 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECB_RS20905 (ECB_03929) yjbR 4249590..4249946 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ECB_RS20910 (ECB_03930) uvrA 4249981..4252803 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  ECB_RS20915 (ECB_03931) ssb 4253058..4253594 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECB_RS20920 (ECB_03932) yjcB 4253693..4253974 (-) 282 WP_001295689.1 YjcB family protein -
  ECB_RS20925 (ECB_03933) pdeC 4254404..4255990 (+) 1587 Protein_4020 c-di-GMP phosphodiesterase PdeC -
  ECB_RS20930 (ECB_03934) soxS 4255993..4256316 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ECB_RS20935 (ECB_03935) soxR 4256402..4256866 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ECB_RS20940 (ECB_03936) ghxP 4257412..4258761 (+) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  ECB_RS20945 (ECB_03937) yjcE 4258913..4260562 (+) 1650 WP_000402207.1 Na+/H+ antiporter -
  ECB_RS20950 (ECB_03938) espX5 4260716..4262008 (-) 1293 WP_001270094.1 T3SS effector pentapeptide repeat protein EspX5 -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=34760 ECB_RS20915 WP_000168305.1 4253058..4253594(+) (ssb) [Escherichia coli B str. REL606]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=34760 ECB_RS20915 WP_000168305.1 4253058..4253594(+) (ssb) [Escherichia coli B str. REL606]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment