Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXN74_RS01625 Genome accession   NZ_CP036199
Coordinates   341780..342310 (-) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia adecarboxylata strain 16005813     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336780..347310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN74_RS01605 (EXN74_01605) soxS 337214..337540 (+) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -
  EXN74_RS01610 (EXN74_01610) - 337537..339123 (-) 1587 WP_130587979.1 EAL domain-containing protein -
  EXN74_RS01615 (EXN74_01615) - 339462..340790 (-) 1329 WP_234600370.1 sensor domain-containing diguanylate cyclase -
  EXN74_RS01620 (EXN74_01620) - 341401..341682 (+) 282 WP_032616001.1 YjcB family protein -
  EXN74_RS01625 (EXN74_01625) ssb 341780..342310 (-) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXN74_RS01635 (EXN74_01635) uvrA 342561..345386 (+) 2826 WP_117386864.1 excinuclease ABC subunit UvrA -
  EXN74_RS01640 (EXN74_01640) - 345387..345740 (-) 354 WP_032615995.1 MmcQ/YjbR family DNA-binding protein -
  EXN74_RS01645 (EXN74_01645) - 345743..346159 (-) 417 WP_130587981.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXN74_RS01650 (EXN74_01650) aphA 346271..346984 (-) 714 WP_032615991.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=347472 EXN74_RS01625 WP_032615999.1 341780..342310(-) (ssb) [Leclercia adecarboxylata strain 16005813]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=347472 EXN74_RS01625 WP_032615999.1 341780..342310(-) (ssb) [Leclercia adecarboxylata strain 16005813]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGCCGTCTGCACCG
GCGCAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472

Multiple sequence alignment