Detailed information NTG0347413

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Pstu14405_RS16730
• Genome accession: NZ_CP036186
• Coordinates: 3638285..3639154 (-)
• Length: 289 a.a.
• NCBI ID: WP_003281196.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain ATCC 14405
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3633285..3644154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pstu14405_RS16695 (Pstu14405_16785)	petA	3633391..3633984 (-)	594	WP_003281184.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
Pstu14405_RS16700 (Pstu14405_16790)	rpsI	3634239..3634631 (-)	393	WP_003281187.1	30S ribosomal protein S9	-
Pstu14405_RS16705 (Pstu14405_16795)	rplM	3634646..3635074 (-)	429	WP_003281188.1	50S ribosomal protein L13	-
Pstu14405_RS16710 (Pstu14405_16800)	-	3635512..3636549 (+)	1038	WP_003281190.1	NADP(H)-dependent aldo-keto reductase	-
Pstu14405_RS16715 (Pstu14405_16805)	-	3636617..3637297 (+)	681	WP_003281192.1	energy-coupling factor ABC transporter permease	-
Pstu14405_RS16720 (Pstu14405_16810)	yacG	3637328..3637522 (-)	195	WP_003281194.1	DNA gyrase inhibitor YacG	-
Pstu14405_RS16725 (Pstu14405_16815)	coaE	3637519..3638127 (-)	609	WP_003281195.1	dephospho-CoA kinase	-
Pstu14405_RS16730 (Pstu14405_16820)	pilD	3638285..3639154 (-)	870	WP_003281196.1	prepilin peptidase	Machinery gene
Pstu14405_RS16735 (Pstu14405_16825)	pilC	3639157..3640374 (-)	1218	WP_003281197.1	type II secretion system F family protein	Machinery gene
Pstu14405_RS16740 (Pstu14405_16830)	pilB	3640376..3642079 (-)	1704	WP_003281199.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Pstu14405_RS16745 (Pstu14405_16835)	pilA	3642389..3642889 (+)	501	WP_003281200.1	pilin	Machinery gene
Pstu14405_RS16750 (Pstu14405_16840)	-	3643392..3643946 (+)	555	WP_003281202.1	REP-associated tyrosine transposase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.56 Da
• Isoelectric Point: 6.6180

>NTDB_id=347413 Pstu14405_RS16730 WP_003281196.1 3638285..3639154(-) (pilD) [Stutzerimonas stutzeri strain ATCC 14405]
MTLIDYLASHVLAFVLCAALLGLLVGSFLNVVIYRLPIMMQRDWRMQAREYLEYPPEPAGERFNLLLPNSRCPHCDHKIR
SWENIPLVSWLALRGKCSACQAPISCRYPLVELACGLLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNDFALFVPLESALWGAVAGYLSLWLVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRMQKAESNTPIPFGPYLAIAGWIALLWGDWITESYLQFVRF

Nucleotide

• Length: 870 bp

>NTDB_id=347413 Pstu14405_RS16730 WP_003281196.1 3638285..3639154(-) (pilD) [Stutzerimonas stutzeri strain ATCC 14405]
ATGACTCTGATCGATTATCTGGCCAGCCACGTGCTGGCCTTTGTTTTGTGTGCTGCTTTGCTTGGTTTGTTGGTTGGCAG
CTTTCTCAATGTCGTGATTTACCGCCTGCCGATCATGATGCAGCGCGATTGGCGTATGCAGGCGCGTGAGTATCTGGAGT
ACCCACCGGAGCCGGCCGGCGAGCGCTTCAACCTGCTGTTGCCGAACTCACGCTGTCCTCACTGTGATCATAAGATTCGC
TCGTGGGAGAACATTCCTTTAGTCAGCTGGTTGGCCCTGCGCGGCAAGTGCTCGGCTTGCCAGGCTCCGATCAGCTGTCG
TTATCCGTTGGTGGAGCTGGCTTGCGGGCTGTTGTCCGGGTATGTCGCCTGGCATTTCGGTTTCTCCTGGCAGGCCGGGG
CGATGTTGTTGCTGACGTGGGGCTTGTTGGCGATGAGCATGATTGATGTCGATCATCAGTTACTGCCTGACGCGCTGGTG
CTGCCGCTGTTATGGCTGGGACTCATTCTCAATGACTTCGCTTTGTTCGTGCCCTTGGAGAGTGCGCTTTGGGGCGCGGT
AGCGGGGTACCTGAGTCTTTGGTTGGTTTACTGGTTGTTCAAGTTGGTTACCGGTAAAGAGGGTATGGGCTACGGTGACT
TCAAGCTGCTTGCGATGCTTGGGGCGTGGGGAGGGTGGCAGGTGCTGCCGTTGACCATCCTGTTGTCATCGGTGGTTGGC
GCTGTGCTCGGTAGCATCCTCTTGCGGATGCAGAAGGCAGAAAGCAATACGCCAATTCCTTTCGGCCCTTACCTTGCTAT
CGCAGGATGGATTGCATTGCTGTGGGGTGACTGGATTACCGAAAGCTACCTGCAGTTCGTACGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.029	94.81	0.55
pilD	Vibrio campbellii strain DS40M4	56.044	94.464	0.529
pilD	Acinetobacter baumannii D1279779	52.113	98.27	0.512
pilD	Acinetobacter nosocomialis M2	52.113	98.27	0.512
pilD	Neisseria gonorrhoeae MS11	53.64	90.311	0.484