Detailed information NTG0347317

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KAN02_RS19355
• Genome accession: NZ_CP036171
• Coordinates: 3603337..3604197 (+)
• Length: 286 a.a.
• NCBI ID: WP_087605809.1
• Uniprot ID: -
• Organism: Acinetobacter nosocomialis strain KAN02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3598337..3609197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KAN02_RS17265 (KAN02_17265)	secG	3598944..3599273 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
KAN02_RS17270 (KAN02_17270)	tpiA	3599286..3600080 (-)	795	WP_087605807.1	triose-phosphate isomerase	-
KAN02_RS17275 (KAN02_17275)	pilB	3600371..3602083 (+)	1713	WP_087605808.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KAN02_RS17280 (KAN02_17280)	pilC	3602111..3603337 (+)	1227	WP_022575843.1	type II secretion system F family protein	Machinery gene
KAN02_RS19355 (KAN02_17285)	pilD	3603337..3604197 (+)	861	WP_087605809.1	prepilin peptidase	Machinery gene
KAN02_RS17290 (KAN02_17290)	coaE	3604199..3604795 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
KAN02_RS17295 (KAN02_17295)	-	3604792..3605706 (-)	915	WP_031952278.1	DMT family transporter	-
KAN02_RS17300 (KAN02_17300)	rlmB	3605742..3606491 (-)	750	WP_087605810.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KAN02_RS17305 (KAN02_17305)	-	3606593..3606919 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KAN02_RS17310 (KAN02_17310)	-	3606996..3608306 (-)	1311	WP_031952274.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32091.46 Da
• Isoelectric Point: 7.1960

>NTDB_id=347317 KAN02_RS19355 WP_087605809.1 3603337..3604197(+) (pilD) [Acinetobacter nosocomialis strain KAN02]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLSSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=347317 KAN02_RS19355 WP_087605809.1 3603337..3604197(+) (pilD) [Acinetobacter nosocomialis strain KAN02]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCC
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAACTACTTACCATGCTAAGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACTATACAAA
TGCTTTTTGGACTGGTCCTCACATGGGTACTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCGTCTTTA
TTGGGTGCAATCATTGGCATCATCTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCGTTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	99.65	100	0.997
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441