Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAVC_RS08000 Genome accession   NC_016912
Coordinates   1620361..1621047 (-) Length   228 a.a.
NCBI ID   WP_000692870.1    Uniprot ID   Q8NW77
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615361..1626047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS07960 (SAVC_07470) rpmA 1616200..1616484 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAVC_RS07965 (SAVC_07475) - 1616496..1616816 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAVC_RS07970 (SAVC_07480) rplU 1616822..1617130 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAVC_RS07975 (SAVC_07485) mreD 1617297..1617827 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAVC_RS07980 (SAVC_07490) mreC 1617827..1618669 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  SAVC_RS07985 (SAVC_07495) - 1618869..1618988 (-) 120 WP_000840602.1 hypothetical protein -
  SAVC_RS07990 (SAVC_07500) - 1619062..1619535 (-) 474 WP_001236735.1 DUF4930 family protein -
  SAVC_RS13990 (SAVC_07505) - 1619695..1619892 (+) 198 WP_000025835.1 hypothetical protein -
  SAVC_RS07995 (SAVC_07510) - 1620009..1620293 (-) 285 WP_000171859.1 hypothetical protein -
  SAVC_RS08000 (SAVC_07515) ysxA/radC 1620361..1621047 (-) 687 WP_000692870.1 DNA repair protein RadC Machinery gene
  SAVC_RS08005 (SAVC_07520) - 1621044..1621751 (-) 708 WP_000261115.1 A24 family peptidase -
  SAVC_RS08015 (SAVC_07525) - 1622021..1623292 (-) 1272 WP_001108346.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SAVC_RS08020 (SAVC_07530) - 1623305..1625935 (-) 2631 WP_000425353.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.28 Da        Isoelectric Point: 7.0539

>NTDB_id=34700 SAVC_RS08000 WP_000692870.1 1620361..1621047(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus VC40]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=34700 SAVC_RS08000 WP_000692870.1 1620361..1621047(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus VC40]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NW77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment