Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW34_RS20240 Genome accession   NZ_CP036102
Coordinates   3998533..3999327 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain JAS391     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3993533..4004327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW34_RS20210 (EXW34_20625) - 3993853..3995925 (-) 2073 WP_002190641.1 sigma 54-interacting transcriptional regulator -
  EXW34_RS20215 (EXW34_20630) - 3996063..3996296 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  EXW34_RS20220 (EXW34_20635) - 3996348..3997076 (-) 729 WP_002033957.1 glycerophosphodiester phosphodiesterase -
  EXW34_RS20225 (EXW34_20640) - 3997127..3997273 (+) 147 WP_001247671.1 YycC family protein -
  EXW34_RS20230 (EXW34_20645) - 3997312..3997515 (-) 204 Protein_3956 YrhA family protein -
  EXW34_RS20235 (EXW34_20655) - 3997720..3998193 (-) 474 WP_002190644.1 SMI1/KNR4 family protein -
  EXW34_RS20240 (EXW34_20660) spo0A 3998533..3999327 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW34_RS20245 (EXW34_20670) spoIVB 3999614..4000906 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  EXW34_RS20250 (EXW34_20675) recN 4001026..4002765 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  EXW34_RS20255 (EXW34_20680) argR 4003036..4003485 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=346836 EXW34_RS20240 WP_002015081.1 3998533..3999327(-) (spo0A) [Bacillus mycoides strain JAS391]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=346836 EXW34_RS20240 WP_002015081.1 3998533..3999327(-) (spo0A) [Bacillus mycoides strain JAS391]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment