Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   GII85_RS08435 Genome accession   NZ_CP045817
Coordinates   1623953..1626001 (+) Length   682 a.a.
NCBI ID   WP_153940051.1    Uniprot ID   -
Organism   Bacillus subtilis strain P5_B1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1618953..1631001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS08405 (GII85_08405) spoVM 1619589..1619669 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  GII85_RS08410 (GII85_08410) rpmB 1619742..1619930 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  GII85_RS08415 (GII85_08415) yloU 1620207..1620569 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  GII85_RS08420 (GII85_08420) fakA 1620585..1622246 (+) 1662 WP_041850840.1 DAK2 domain-containing protein -
  GII85_RS08425 (GII85_08425) sdaAB 1622385..1623047 (+) 663 WP_041850839.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  GII85_RS08430 (GII85_08430) sdaAA 1623073..1623975 (+) 903 WP_003232049.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GII85_RS08435 (GII85_08435) recG 1623953..1626001 (+) 2049 WP_153940051.1 ATP-dependent DNA helicase RecG Machinery gene
  GII85_RS08440 (GII85_08440) fapR 1626110..1626676 (+) 567 WP_003232044.1 transcription factor FapR -
  GII85_RS08445 (GII85_08445) plsX 1626690..1627691 (+) 1002 WP_003232041.1 phosphate acyltransferase PlsX -
  GII85_RS08450 (GII85_08450) fabD 1627710..1628663 (+) 954 WP_041850838.1 ACP S-malonyltransferase -
  GII85_RS08455 (GII85_08455) fabG 1628656..1629396 (+) 741 WP_003232035.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  GII85_RS08460 (GII85_08460) acpP 1629480..1629713 (+) 234 WP_003154310.1 acyl carrier protein -
  GII85_RS08465 (GII85_08465) rncS 1629853..1630602 (+) 750 WP_003232030.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 78120.73 Da        Isoelectric Point: 7.2740

>NTDB_id=346793 GII85_RS08435 WP_153940051.1 1623953..1626001(+) (recG) [Bacillus subtilis strain P5_B1]
MKQHQQTSIANIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLLN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=346793 GII85_RS08435 WP_153940051.1 1623953..1626001(+) (recG) [Bacillus subtilis strain P5_B1]
GTGAAACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTACACGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGAAGCTTTC
GCTCGGCTCTGTGGTGACAGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGCATTGAGCCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAGGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAACGT
TTTTCAAACGAAGAACTTATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAATCGTCTACTTCAAGGGGACGTTGGATCAGGAAAAACGGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCTGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACGTTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATCGATGAGATGCCGGCAGGACGAAAGAGAATCGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATATTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGGCTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGAAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.707

100

0.997

  recG/mmsA Streptococcus pneumoniae R6

48.82

99.413

0.485

  recG/mmsA Streptococcus pneumoniae R36A

48.82

99.413

0.485

  recG Neisseria meningitidis strain C311

39.542

96.041

0.38


Multiple sequence alignment