Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW59_RS12945 Genome accession   NZ_CP036084
Coordinates   1614019..1614621 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain JAS1004     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609019..1619621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW59_RS12925 (EXW59_13230) dnaD 1609322..1610029 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  EXW59_RS12930 (EXW59_13235) nth 1610045..1610692 (+) 648 WP_002030794.1 endonuclease III -
  EXW59_RS12935 (EXW59_13240) - 1610696..1611214 (+) 519 WP_002030796.1 YpoC family protein -
  EXW59_RS12940 (EXW59_13245) - 1611241..1613952 (-) 2712 WP_215560303.1 penicillin-binding protein 1A -
  EXW59_RS12945 (EXW59_13250) recU 1614019..1614621 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW59_RS12950 (EXW59_13255) - 1614725..1615750 (+) 1026 WP_078204387.1 DUF2515 domain-containing protein -
  EXW59_RS33125 - 1616094..1616240 (-) 147 WP_306302660.1 phage portal protein -
  EXW59_RS12955 (EXW59_13260) - 1616359..1616601 (+) 243 WP_002030820.1 hypothetical protein -
  EXW59_RS12960 (EXW59_13265) - 1616617..1616961 (+) 345 WP_002011864.1 YppE family protein -
  EXW59_RS12965 (EXW59_13270) - 1616987..1617178 (-) 192 WP_002030817.1 YppF family protein -
  EXW59_RS12970 (EXW59_13275) - 1617356..1618018 (+) 663 WP_098636207.1 YppG family protein -
  EXW59_RS12975 (EXW59_13280) - 1618175..1618600 (+) 426 WP_002011871.1 CotD family spore coat protein -
  EXW59_RS12980 (EXW59_13285) - 1618657..1619211 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346526 EXW59_RS12945 WP_002030800.1 1614019..1614621(-) (recU) [Bacillus mycoides strain JAS1004]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346526 EXW59_RS12945 WP_002030800.1 1614019..1614621(-) (recU) [Bacillus mycoides strain JAS1004]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGTGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment