Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EXW59_RS17800 Genome accession   NZ_CP036084
Coordinates   2613301..2615154 (+) Length   617 a.a.
NCBI ID   WP_215560478.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS1004     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2608301..2620154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW59_RS17790 (EXW59_18210) pssA 2609789..2610280 (-) 492 WP_002085344.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EXW59_RS32735 (EXW59_18215) - 2610803..2610895 (+) 93 Protein_2560 IS6 family transposase -
  EXW59_RS17795 (EXW59_18220) - 2611058..2613304 (+) 2247 WP_215560477.1 ABC transporter ATP-binding protein -
  EXW59_RS17800 (EXW59_18225) rcrQ 2613301..2615154 (+) 1854 WP_215560478.1 ABC transporter ATP-binding protein Regulator
  EXW59_RS17805 (EXW59_18230) - 2615534..2617252 (+) 1719 WP_215560479.1 thiamine pyrophosphate-binding protein -
  EXW59_RS17810 (EXW59_18235) - 2617344..2618774 (+) 1431 WP_215560480.1 PQQ-dependent sugar dehydrogenase -
  EXW59_RS17815 (EXW59_18240) - 2618968..2619540 (+) 573 WP_002189725.1 hypothetical protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68361.26 Da        Isoelectric Point: 6.2669

>NTDB_id=346529 EXW59_RS17800 WP_215560478.1 2613301..2615154(+) (rcrQ) [Bacillus mycoides strain JAS1004]
MSDRKQSGPGPGGPMGGGMRKIEKAKNFKGTMNKLLQYLKPYKLSILIVILFAIGSAAFTIVGPKILGNATTKLFEGLVS
KVSGAPGAAIDFTYIGNIVILLLGLYILSTVFGIIQGYIISGVAQKVSYNFRKEIDEKINRMPLKYFDKTTHGEVLSRIT
NDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALLILPVSMILIMAVVKRSQKYFKSQQEYLGHVNGQVEE
IYSGHNIVKAFNKEEEEVKKFEKVNDTLYHSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAVKRTIAVGDILAFVQ
YVRSFTQPIAQVAQIANVLQSTAAAAERVFEFLEEEEEVPEAENPVKLQKVQGEVAFQDVQFGYNPDKIIINDFSSNIKP
GQKVAIVGPTGAGKTTIVKLLMRFYDINSGAICIDGHDIKDFTREDLRNMFGMVLQDTWLFNGSIMENIRYGRLDATDEE
VIEAAKAAHVHNFVKTLPNKYQMELNEEASNVSQGQKQLLTIARALIADPKILILDEATSSIDTRTEVLIQKAMENLMEG
RTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLKADGFYASLYNSQFEGADAS

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=346529 EXW59_RS17800 WP_215560478.1 2613301..2615154(+) (rcrQ) [Bacillus mycoides strain JAS1004]
ATGAGTGATAGAAAACAAAGCGGCCCTGGTCCTGGCGGTCCTATGGGCGGCGGCATGAGAAAGATTGAGAAAGCAAAAAA
CTTCAAAGGAACGATGAATAAACTCCTTCAATACTTGAAGCCCTATAAATTATCAATCTTAATCGTTATCCTTTTCGCAA
TCGGCAGTGCAGCCTTTACAATCGTTGGTCCAAAAATTTTAGGAAACGCGACAACAAAACTTTTCGAAGGACTCGTAAGC
AAAGTATCAGGAGCACCCGGTGCGGCCATTGACTTTACCTATATCGGAAACATTGTCATTTTACTCCTTGGATTATATAT
ACTGAGCACTGTGTTTGGTATTATCCAGGGGTACATTATTTCTGGAGTAGCTCAAAAAGTATCTTATAACTTCAGAAAAG
AAATCGATGAAAAAATTAACCGTATGCCGCTGAAATACTTTGATAAAACAACGCACGGCGAAGTATTATCGAGAATTACA
AATGACGTAGATACGGTGAGCCAAACTTTAAACCAAAGTATGTCGCAAATCATCACATCCGTTATTACAATCATCGGTGT
ACTTATCATGATGTTATCAATCAGCTGGCAAATGACATTAGTGGCGCTTTTAATATTGCCAGTATCCATGATTCTCATCA
TGGCAGTCGTAAAACGATCACAAAAATACTTCAAATCCCAGCAAGAATATTTAGGACACGTAAACGGTCAGGTCGAAGAA
ATTTATAGTGGTCACAATATCGTAAAAGCCTTCAACAAAGAAGAAGAAGAAGTGAAAAAATTCGAAAAGGTAAATGATAC
CCTTTACCATTCTGCATGGAAATCTCAATTTTTATCTGGAATGATGATGCCGATTATGACATTTATCGGTAATATCGGTT
ACGTCGCTGTATCTATTTTAGGTGGATGGCTTGCGGTAAAGAGAACCATCGCAGTTGGAGACATTTTAGCCTTTGTGCAA
TATGTTAGAAGCTTTACGCAACCAATCGCTCAAGTAGCACAAATCGCGAACGTACTTCAATCTACTGCAGCTGCTGCAGA
AAGAGTCTTCGAATTTTTAGAAGAAGAAGAGGAAGTGCCAGAAGCAGAAAATCCAGTGAAGCTGCAAAAAGTTCAAGGAG
AAGTTGCCTTCCAAGATGTTCAATTTGGATACAATCCAGATAAGATCATCATCAATGATTTCTCATCTAACATTAAACCT
GGACAAAAGGTAGCAATCGTCGGACCAACCGGAGCTGGTAAAACAACGATTGTAAAACTGTTAATGCGTTTCTATGACAT
AAACAGCGGTGCAATATGTATCGACGGTCACGATATAAAAGACTTCACGCGAGAAGACCTGCGCAACATGTTTGGTATGG
TACTTCAAGACACTTGGCTATTTAACGGCTCCATCATGGAAAATATACGTTACGGTAGACTCGATGCTACAGACGAAGAG
GTAATTGAAGCAGCGAAAGCAGCTCACGTTCACAACTTCGTAAAAACATTACCAAATAAATATCAAATGGAACTAAACGA
AGAAGCAAGCAACGTATCCCAAGGACAAAAGCAACTACTAACAATTGCACGTGCCCTTATAGCGGATCCGAAAATATTAA
TACTCGATGAAGCAACAAGCTCCATTGACACTCGTACAGAAGTACTGATTCAAAAAGCGATGGAAAACCTTATGGAAGGT
AGAACAAGCTTCATTATCGCTCATAGATTATCAACAATACGTGATGCAGATTTAATCCTTGTCATGAAAGACGGAGATAT
TGTAGAACAAGGTAATCATGAAGAGTTATTGAAAGCTGATGGTTTCTATGCTTCGCTTTATAATAGTCAGTTTGAAGGTG
CGGATGCTTCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(392-540)

ABC transporter transmembrane region (ABC_membrane)

(46-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

94.489

0.486

Multiple sequence alignment