Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EXW64_RS26965 Genome accession   NZ_CP036052
Coordinates   5267440..5267970 (-) Length   176 a.a.
NCBI ID   WP_000981964.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS03/3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5262440..5272970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW64_RS26945 (EXW64_27545) rplI 5263651..5264097 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  EXW64_RS26950 (EXW64_27550) - 5264094..5266067 (-) 1974 WP_001113907.1 DHH family phosphoesterase -
  EXW64_RS26955 (EXW64_27555) - 5266146..5267081 (-) 936 WP_000814850.1 YybS family protein -
  EXW64_RS26960 (EXW64_27560) rpsR 5267162..5267395 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  EXW64_RS26965 (EXW64_27565) ssbA 5267440..5267970 (-) 531 WP_000981964.1 single-stranded DNA-binding protein Machinery gene
  EXW64_RS26970 (EXW64_27570) rpsF 5267997..5268287 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  EXW64_RS26975 (EXW64_27575) ychF 5268479..5269579 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  EXW64_RS26980 (EXW64_27580) - 5269694..5269891 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  EXW64_RS26985 (EXW64_27585) - 5269912..5270793 (-) 882 WP_000365117.1 mechanosensitive ion channel family protein -
  EXW64_RS26990 (EXW64_27590) yyaC 5271053..5271649 (+) 597 WP_001020736.1 spore protease YyaC -
  EXW64_RS26995 (EXW64_27595) spo0J 5271670..5272521 (-) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18999.73 Da        Isoelectric Point: 4.9222

>NTDB_id=346309 EXW64_RS26965 WP_000981964.1 5267440..5267970(-) (ssbA) [Bacillus toyonensis strain JAS03/3]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNSGNTGNSGFTKNDDPF
SNVGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=346309 EXW64_RS26965 WP_000981964.1 5267440..5267970(-) (ssbA) [Bacillus toyonensis strain JAS03/3]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGCAACTCAGGTAACACTGGAAACTCTGGATTTACGAAGAATGACGATCCATTT
TCGAATGTTGGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.832

100

0.71
  ssb Latilactobacillus sakei subsp. sakei 23K

56.354

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.375

Multiple sequence alignment