Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   GFB63_RS08295 Genome accession   NZ_CP045596
Coordinates   1612268..1612915 (-) Length   215 a.a.
NCBI ID   WP_193838242.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607268..1617915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS08275 (GFB63_08495) holA 1607596..1608630 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  GFB63_RS08280 (GFB63_08500) sodA 1608725..1609330 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  GFB63_RS08285 (GFB63_08505) - 1609409..1610658 (-) 1250 Protein_1596 ISL3 family transposase -
  GFB63_RS08290 (GFB63_08515) - 1610848..1612227 (+) 1380 WP_100262403.1 serine hydrolase -
  GFB63_RS08295 (GFB63_08520) cclA/cilC 1612268..1612915 (-) 648 WP_193838242.1 A24 family peptidase Machinery gene
  GFB63_RS08300 (GFB63_08525) - 1613024..1613545 (+) 522 WP_011680999.1 Dps family protein -
  GFB63_RS08305 (GFB63_08530) - 1613598..1613795 (-) 198 Protein_1600 prepilin peptidase -
  GFB63_RS08310 (GFB63_08535) - 1613904..1614425 (+) 522 WP_011680999.1 Dps family protein -
  GFB63_RS08315 (GFB63_08540) - 1614478..1614675 (-) 198 Protein_1602 prepilin peptidase -
  GFB63_RS08320 (GFB63_08545) - 1614784..1615305 (+) 522 WP_011680999.1 Dps family protein -
  GFB63_RS08325 (GFB63_08550) - 1615394..1615831 (+) 438 WP_100262404.1 Fur family transcriptional regulator -
  GFB63_RS08330 (GFB63_08555) - 1615941..1616147 (+) 207 WP_022096801.1 YqgQ family protein -
  GFB63_RS08335 (GFB63_08560) - 1616140..1617108 (+) 969 WP_084825911.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24920.03 Da        Isoelectric Point: 8.5469

>NTDB_id=345259 GFB63_RS08295 WP_193838242.1 1612268..1612915(-) (cclA/cilC) [Streptococcus thermophilus strain TK-P3A]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPFLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=345259 GFB63_RS08295 WP_193838242.1 1612268..1612915(-) (cclA/cilC) [Streptococcus thermophilus strain TK-P3A]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCTTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381

Multiple sequence alignment