Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXN22_RS24695 Genome accession   NZ_CP035952
Coordinates   5383606..5384121 (-) Length   171 a.a.
NCBI ID   WP_130266508.1    Uniprot ID   A0A411MPI9
Organism   Pseudomonas tructae strain SNU WT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5378606..5389121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN22_RS24690 (EXN22_24690) - 5381824..5383251 (-) 1428 WP_130266507.1 phosphatidylserine decarboxylase family protein -
  EXN22_RS24695 (EXN22_24695) ssb 5383606..5384121 (-) 516 WP_130266508.1 single-stranded DNA-binding protein Machinery gene
  EXN22_RS24700 (EXN22_24700) - 5384131..5385525 (-) 1395 WP_130266509.1 MFS transporter -
  EXN22_RS24705 (EXN22_24705) uvrA 5385655..5388489 (+) 2835 WP_130266510.1 excinuclease ABC subunit UvrA -
  EXN22_RS24710 (EXN22_24710) bfr 5388549..5389013 (-) 465 WP_130266511.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19087.19 Da        Isoelectric Point: 5.9314

>NTDB_id=345246 EXN22_RS24695 WP_130266508.1 5383606..5384121(-) (ssb) [Pseudomonas tructae strain SNU WT1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQNQDGSQQQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=345246 EXN22_RS24695 WP_130266508.1 5383606..5384121(-) (ssb) [Pseudomonas tructae strain SNU WT1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGTCAAGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTTGAAAAAACCGAAT
GGCACCGCGTCTCGATGTTCGGCAAGGTTGCGGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAGAACCAGGACGGCTCGCAGCAGCAAGGTGGCAACAACTACAACCAGGCGCCGC
GTCAGCAGGCTCCGCGTCCACAGCAGTCGGCGCCGCAACAGCGCCCTGCGCCACAGCAGGCCGCACCGCAGCCGGCTCCG
GACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411MPI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.62
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.532
  ssb Neisseria meningitidis MC58

48.295

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.497

Multiple sequence alignment