Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9E88_RS15260 Genome accession   NZ_CP035934
Coordinates   3240578..3241177 (-) Length   199 a.a.
NCBI ID   WP_106984236.1    Uniprot ID   A0A7Y8Q0L6
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3235578..3246177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS15230 (C9E88_005160) - 3235625..3236500 (-) 876 WP_106984241.1 pirin family protein -
  C9E88_RS15235 (C9E88_005155) ycaC 3236816..3237439 (+) 624 WP_106984240.1 isochorismate family cysteine hydrolase YcaC -
  C9E88_RS15240 (C9E88_005150) - 3237582..3238505 (+) 924 WP_106984239.1 LysR substrate-binding domain-containing protein -
  C9E88_RS15245 (C9E88_005145) ahpC 3238566..3239129 (-) 564 WP_106984238.1 alkyl hydroperoxide reductase subunit C -
  C9E88_RS15250 (C9E88_005140) - 3239289..3239912 (-) 624 WP_106984304.1 TetR/AcrR family transcriptional regulator -
  C9E88_RS15255 (C9E88_005135) - 3240048..3240512 (+) 465 WP_106984237.1 hotdog fold domain-containing protein -
  C9E88_RS15260 (C9E88_005130) ssb 3240578..3241177 (-) 600 WP_106984236.1 single-stranded DNA-binding protein Machinery gene
  C9E88_RS15265 (C9E88_005125) - 3241229..3242593 (-) 1365 WP_106984303.1 MFS transporter -
  C9E88_RS15270 (C9E88_005120) - 3242742..3243827 (-) 1086 WP_106984235.1 DUF475 domain-containing protein -
  C9E88_RS15275 (C9E88_005115) tenA 3244111..3244785 (+) 675 WP_106984234.1 thiaminase II -
  C9E88_RS15280 (C9E88_005110) - 3244852..3245199 (-) 348 WP_106984233.1 GlpM family protein -
  C9E88_RS15285 (C9E88_005105) - 3245395..3245769 (+) 375 WP_106984232.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21784.52 Da        Isoelectric Point: 6.4829

>NTDB_id=345173 C9E88_RS15260 WP_106984236.1 3240578..3241177(-) (ssb) [Acinetobacter cumulans strain WCHAc060092]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQGQGFEQPRFNNNNGGQQGSYGQQGGYGNANQGGQGGYGGAQQG
GFNNNQSNGYGNNNPAAFAPKPQAAPAAAPADLDDDLPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=345173 C9E88_RS15260 WP_106984236.1 3240578..3241177(-) (ssb) [Acinetobacter cumulans strain WCHAc060092]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGTGATCCTGAAACCAAAACTTTTCCAAATGGCGGCTC
TTTGACTCAGTTCTCAATTGCAACAAGCGACTCGTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCACAATCGTTTAGGCGAAATTGCACAGCAATACCTACGCAAAGGTTCAAAAGTTTATATCGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAGCGCTACACGACTGAAATTCGTGGCGAACAAATGCAAAT
GCTAGACAATAACCGTCAGCAAGGCGAACAAGGCCAAGGTTTTGAACAGCCACGTTTTAACAACAATAATGGCGGTCAGC
AAGGTAGTTACGGCCAGCAGGGCGGTTATGGTAATGCTAACCAAGGCGGTCAAGGTGGCTATGGTGGTGCTCAGCAAGGT
GGTTTTAACAATAACCAATCAAATGGTTATGGTAATAACAATCCAGCTGCATTTGCGCCAAAACCACAAGCGGCACCTGC
GGCTGCACCTGCAGATTTAGATGACGACCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8Q0L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.508
  ssb Vibrio cholerae strain A1552

41.827

100

0.437
  ssb Neisseria meningitidis MC58

40.609

98.995

0.402
  ssb Neisseria gonorrhoeae MS11

40.609

98.995

0.402

Multiple sequence alignment