Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C9E88_RS01325 Genome accession   NZ_CP035934
Coordinates   291503..292918 (-) Length   471 a.a.
NCBI ID   WP_106983865.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 286503..297918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01310 (C9E88_002960) lptG 287562..288632 (+) 1071 WP_106983862.1 LPS export ABC transporter permease LptG -
  C9E88_RS01315 (C9E88_002955) gpmI 288757..290304 (+) 1548 WP_106983863.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  C9E88_RS01320 (C9E88_002950) - 290327..291499 (+) 1173 WP_106983864.1 S41 family peptidase -
  C9E88_RS01325 (C9E88_002945) pilR 291503..292918 (-) 1416 WP_106983865.1 sigma-54 dependent transcriptional regulator Regulator
  C9E88_RS01330 (C9E88_002940) pilS 292941..294509 (-) 1569 WP_106983866.1 HAMP domain-containing sensor histidine kinase Regulator
  C9E88_RS01335 (C9E88_002935) - 294530..295165 (-) 636 WP_106984092.1 response regulator -
  C9E88_RS01340 (C9E88_002930) - 295391..296440 (+) 1050 WP_130125643.1 D-alanyl-D-alanine endopeptidase -
  C9E88_RS01345 (C9E88_002925) thrC 296545..297684 (-) 1140 WP_106983867.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52888.89 Da        Isoelectric Point: 6.2355

>NTDB_id=345138 C9E88_RS01325 WP_106983865.1 291503..292918(-) (pilR) [Acinetobacter cumulans strain WCHAc060092]
MAEQQPLVLLVDDEEDLCTLMQMSLSRMGIRTHIAHRLSEARQCLTEHQYDACLTDLNLPDGNGLQLLQWMNEHCPSLPV
AVLTAYGNMEIAIAALKAGAFDFVSKPINPKHLEQLLQKALNKPIPSTTPQEDTLEYKMLIGQSLPIQQLRITLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPSDLMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKRIRPVGADHEIDVDFRIISASHQDLDGLVQQGRFRQDLFFRIHVMDLELPPLRERGNDILL
LAQHFIQKICSEWDIKAKALTERAQDFLLNQYYPGNVRELRNIIERAITLSDTDSIDLPHLQSAPLRRSAPVLDHTDASQ
AVAMASVTSMPLKKLPEEGLEPYLENIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=345138 C9E88_RS01325 WP_106983865.1 291503..292918(-) (pilR) [Acinetobacter cumulans strain WCHAc060092]
ATGGCAGAACAGCAACCATTGGTACTGTTGGTCGATGATGAAGAAGACTTATGTACACTCATGCAAATGTCTTTATCACG
CATGGGGATTCGTACACACATTGCACACCGACTCAGTGAAGCTCGCCAATGCTTAACAGAACACCAATACGATGCCTGTT
TAACTGACCTCAACCTTCCTGATGGTAATGGCTTACAACTATTACAATGGATGAATGAGCACTGCCCAAGCCTGCCTGTA
GCCGTTTTAACGGCGTATGGCAACATGGAAATTGCCATTGCAGCGCTCAAAGCAGGTGCTTTCGATTTTGTCAGCAAACC
CATTAATCCAAAGCACTTAGAGCAACTACTACAAAAAGCACTCAATAAACCAATTCCTTCTACAACACCACAAGAAGACA
CACTAGAATACAAAATGTTGATTGGACAATCCTTGCCAATTCAACAGCTTCGTATCACTTTGAAAAAAATTGCTCGCTCA
CAAGCACCTGTTTTTATTACTGGTGAATCAGGTACGGGTAAAGAAGTTGTCGCAAATTTGGTGCACCGCCTAAGTAATCG
AAATGAAGGCCCCTTTATTGCCATTAACTGCGGTGCGATTCCGAGCGACTTAATGGAAAGTGAGCTTTTTGGCCATAAAA
AAGGCAGCTTCACAGGTGCAACCCAAGATAAGCAAGGTCTGATTCAATCAGCACATGGCGGTAGTTTATTCCTCGATGAA
ATTGCGGAATTACCCCTAAGCATGCAAGTAAAATTGCTCCGCGCTGTGCAAGAAAAGCGGATTCGTCCCGTCGGTGCAGA
CCATGAAATTGATGTCGATTTCCGCATTATCAGTGCAAGTCATCAAGATCTAGATGGACTGGTGCAACAGGGTCGCTTCC
GTCAGGATTTATTCTTCCGTATTCATGTGATGGACTTAGAATTGCCACCGCTTCGTGAACGTGGCAATGACATCTTGTTA
TTGGCGCAGCATTTTATTCAAAAAATTTGCTCAGAATGGGATATTAAAGCCAAGGCCCTCACAGAGCGCGCGCAAGATTT
TCTACTCAATCAATATTATCCAGGCAACGTGCGAGAGCTACGCAATATTATTGAACGTGCCATCACGCTCAGCGACACAG
ACAGCATAGATTTACCTCATTTGCAAAGTGCCCCACTGCGCCGTAGTGCACCTGTGCTGGATCACACAGATGCCTCTCAG
GCTGTTGCTATGGCCTCTGTTACCAGTATGCCATTAAAGAAACTGCCTGAAGAAGGACTAGAGCCTTATCTAGAAAATAT
CGAAAAAGAAATTCTACTAAATGCGCTCAATCTGACGCACTGGAATCGAACCTTAGCTGCTAAAAAGCTGGGGATGTCAT
TTCGCTCTTTGCGCTATCGTTTAAAGAAATTTGGGCTCGATACCGACGAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.264

100

0.756
  pilR Pseudomonas aeruginosa PAK

50.652

97.665

0.495

Multiple sequence alignment