Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C9E88_RS01330 Genome accession   NZ_CP035934
Coordinates   292941..294509 (-) Length   522 a.a.
NCBI ID   WP_106983866.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 287941..299509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01315 (C9E88_002955) gpmI 288757..290304 (+) 1548 WP_106983863.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  C9E88_RS01320 (C9E88_002950) - 290327..291499 (+) 1173 WP_106983864.1 S41 family peptidase -
  C9E88_RS01325 (C9E88_002945) pilR 291503..292918 (-) 1416 WP_106983865.1 sigma-54 dependent transcriptional regulator Regulator
  C9E88_RS01330 (C9E88_002940) pilS 292941..294509 (-) 1569 WP_106983866.1 HAMP domain-containing sensor histidine kinase Regulator
  C9E88_RS01335 (C9E88_002935) - 294530..295165 (-) 636 WP_106984092.1 response regulator -
  C9E88_RS01340 (C9E88_002930) - 295391..296440 (+) 1050 WP_130125643.1 D-alanyl-D-alanine endopeptidase -
  C9E88_RS01345 (C9E88_002925) thrC 296545..297684 (-) 1140 WP_106983867.1 threonine synthase -
  C9E88_RS01350 (C9E88_002920) - 297742..299046 (-) 1305 WP_106984094.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59654.28 Da        Isoelectric Point: 7.0183

>NTDB_id=345139 C9E88_RS01330 WP_106983866.1 292941..294509(-) (pilS) [Acinetobacter cumulans strain WCHAc060092]
MPQPSYHAELNQYHLGLWYSAYRFIISTGLLLIFMLTYRQLSVEYQYPRFYLYVLSAYALISSLQFFLMRGVRAYIPKQL
VSLFAVDVTALSLLTLALDGPNLHISLLFVICIFAASLLLNAQKALLITLIAVISVVYQVFIGSIFELTSLKNIGNSALL
AFLFFVVYGSGQIAIRRFQIMENLNFSQSLELNQLQNINRYILEQIQTGYLVLDQNCHVVLSNPEACHLLGIAPMYRYET
HPLYKTQPDLFELMKFEELPDGDTFQFQSQQSRFHIHVRVQKLNVPHQTLTLLVLQDAQKINQHVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLFLDSDPSQQKLLHSMIAKQSVRIDRIVQDTLNMVKNKETRPILIPLKHFMPQLIQDDLSDIQD
KIQLNMREPVAIHFDEGQLRQVLINLVRNAIRHNDPSTPHIELNIYTYQKYIHIDVRDFGLGVAEHDRSALFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLTYVEQKEQGACFRVSCLAVTV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=345139 C9E88_RS01330 WP_106983866.1 292941..294509(-) (pilS) [Acinetobacter cumulans strain WCHAc060092]
ATGCCCCAGCCTTCTTATCATGCGGAATTAAATCAGTATCATCTCGGGCTGTGGTATAGCGCATATCGCTTCATTATCAG
TACGGGCTTATTGCTGATTTTTATGCTGACTTATCGGCAGTTAAGTGTCGAATATCAGTATCCGCGCTTTTATTTATACG
TCCTGAGCGCTTATGCATTAATCAGTAGCCTACAGTTTTTTTTAATGCGTGGCGTGCGTGCTTATATTCCCAAGCAACTG
GTAAGCCTCTTTGCTGTCGATGTTACGGCGCTTAGCTTATTAACCTTGGCACTTGATGGTCCAAATTTACATATCAGCTT
GCTGTTCGTCATTTGTATTTTTGCAGCTTCGCTTTTACTCAATGCACAAAAAGCTCTACTCATTACACTGATTGCCGTCA
TTAGTGTCGTTTACCAAGTATTTATTGGCTCCATTTTCGAGCTGACCTCACTGAAAAATATTGGTAATAGTGCTCTATTG
GCCTTCTTATTTTTTGTGGTCTATGGAAGTGGACAAATTGCGATTCGTCGCTTCCAGATCATGGAAAATTTGAACTTTTC
ACAGTCCCTCGAATTAAACCAACTGCAAAATATTAACCGTTATATTTTAGAGCAAATTCAAACGGGCTATTTGGTGCTCG
ACCAAAACTGCCATGTGGTACTCAGCAATCCTGAAGCTTGTCATTTATTGGGCATTGCGCCGATGTATCGCTATGAAACA
CATCCACTGTATAAAACCCAACCCGACTTATTTGAGCTGATGAAATTTGAAGAACTGCCCGATGGCGATACATTCCAATT
TCAATCACAACAAAGTCGCTTTCATATTCATGTTCGGGTACAAAAACTGAATGTGCCGCACCAGACCTTAACCTTACTGG
TCTTGCAGGATGCACAAAAAATTAATCAGCATGTACAACAGCTAAAATTAGCAGCCCTTGGTCAGCTTTCTGCCAGTATT
GCACATGAAATCCGTAATCCATTGGCGGCCATCGTTCAAGCCAATGATCTATTTTTAGATAGTGATCCATCACAACAAAA
ACTATTACATAGCATGATTGCTAAACAATCGGTGCGTATTGACCGTATTGTGCAAGACACGCTCAATATGGTGAAAAATA
AAGAAACGCGCCCAATACTGATTCCATTAAAACACTTTATGCCTCAGCTCATTCAAGATGATCTTTCGGATATTCAAGAT
AAAATTCAACTGAATATGCGAGAGCCTGTGGCGATTCACTTTGATGAAGGTCAATTGCGCCAAGTCCTGATTAATTTGGT
GCGCAATGCCATCCGACATAATGACCCCAGCACACCGCATATCGAATTAAATATTTATACATATCAAAAATATATACATA
TTGATGTGCGTGATTTCGGCCTTGGTGTTGCAGAACATGATCGATCTGCATTATTTCAACCATTTTTCAGTACCGAAATC
ACAGGAACTGGTTTAGGATTGTACCTAGCGCACAGTTTTTGCGAAGCAAATCAAGCACAGCTCACCTACGTAGAACAAAA
AGAACAAGGGGCCTGTTTTAGAGTTTCTTGCTTAGCCGTGACCGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.103

96.935

0.563

Multiple sequence alignment