Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GD578_RS18045 Genome accession   NZ_CP045560
Coordinates   3728437..3729021 (-) Length   194 a.a.
NCBI ID   WP_002053972.1    Uniprot ID   A0AA36NV74
Organism   Acinetobacter nosocomialis strain AC1530     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3723437..3734021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS18035 (GD578_18270) - 3725506..3727062 (-) 1557 WP_000163911.1 site-specific integrase -
  GD578_RS18040 (GD578_18275) - 3727055..3728281 (-) 1227 WP_002147669.1 site-specific integrase -
  GD578_RS18045 (GD578_18280) ssb 3728437..3729021 (-) 585 WP_002053972.1 single-stranded DNA-binding protein Machinery gene
  GD578_RS18050 (GD578_18285) - 3729073..3730437 (-) 1365 WP_004711530.1 MFS transporter -
  GD578_RS18055 (GD578_18290) - 3730584..3731666 (-) 1083 WP_002054048.1 DUF475 domain-containing protein -
  GD578_RS18060 (GD578_18295) tenA 3731930..3732604 (+) 675 WP_000899420.1 thiaminase II -
  GD578_RS18065 (GD578_18300) - 3732655..3732996 (-) 342 WP_002053924.1 GlpM family protein -
  GD578_RS18070 (GD578_18305) - 3733049..3733402 (-) 354 WP_002053763.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21008.83 Da        Isoelectric Point: 6.4822

>NTDB_id=345115 GD578_RS18045 WP_002053972.1 3728437..3729021(-) (ssb) [Acinetobacter nosocomialis strain AC1530]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGGYGGQGG
FGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=345115 GD578_RS18045 WP_002053972.1 3728437..3729021(-) (ssb) [Acinetobacter nosocomialis strain AC1530]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAACGTTATACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGCGGTTATCAAAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGTGGT
TTCGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAGCCAGCATCTGCACCAGCTGA
TTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NV74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.746

100

0.526
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

37.563

100

0.381
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.381