Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CCO2228_RS07380 Genome accession   NZ_CP035927
Coordinates   1452209..1452520 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain RM2228     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447209..1457520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS07360 (CCO2228_1441) ctsE 1448076..1449638 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  CCO2228_RS07365 (CCO2228_1442) - 1449631..1450227 (-) 597 WP_002779313.1 CDC27 family protein -
  CCO2228_RS07370 (CCO2228_1443) ctsP 1450224..1450820 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  CCO2228_RS07375 (CCO2228_1444) ctsD 1450813..1452231 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CCO2228_RS07380 (CCO2228_1445) ctsR 1452209..1452520 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  CCO2228_RS07385 (CCO2228_1446) nifJ 1452544..1456104 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CCO2228_RS07390 (CCO2228_1447) - 1456208..1456846 (-) 639 WP_002779318.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=345098 CCO2228_RS07380 WP_002779316.1 1452209..1452520(-) (ctsR) [Campylobacter coli strain RM2228]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=345098 CCO2228_RS07380 WP_002779316.1 1452209..1452520(-) (ctsR) [Campylobacter coli strain RM2228]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment