Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GD578_RS15810 Genome accession   NZ_CP045560
Coordinates   3281173..3281535 (-) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain AC1530     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3276173..3286535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS15800 (GD578_16015) - 3278451..3280532 (-) 2082 WP_002051535.1 methyl-accepting chemotaxis protein -
  GD578_RS15805 (GD578_16020) - 3280579..3281115 (-) 537 WP_002051357.1 chemotaxis protein CheW -
  GD578_RS15810 (GD578_16025) pilH 3281173..3281535 (-) 363 WP_002051151.1 PleD family two-component system response regulator Machinery gene
  GD578_RS15815 (GD578_16030) pilG 3281562..3281945 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  GD578_RS15820 (GD578_16035) - 3282228..3282866 (+) 639 WP_002051486.1 hypothetical protein -
  GD578_RS15825 (GD578_16040) - 3282926..3284044 (+) 1119 WP_002051508.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=345097 GD578_RS15810 WP_002051151.1 3281173..3281535(-) (pilH) [Acinetobacter nosocomialis strain AC1530]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=345097 GD578_RS15810 WP_002051151.1 3281173..3281535(-) (pilH) [Acinetobacter nosocomialis strain AC1530]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment