Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | NT05HA_RS06730 | Genome accession | NC_012913 |
| Coordinates | 1471765..1473003 (+) | Length | 412 a.a. |
| NCBI ID | WP_005701265.1 | Uniprot ID | - |
| Organism | Aggregatibacter aphrophilus NJ8700 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1466765..1478003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NT05HA_RS06710 (NT05HA_1461) | nanQ | 1468268..1468738 (+) | 471 | WP_005701260.1 | N-acetylneuraminate anomerase | - |
| NT05HA_RS06715 (NT05HA_1462) | ampD | 1469210..1469764 (-) | 555 | WP_012771713.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| NT05HA_RS06720 (NT05HA_1464) | pilA | 1469889..1470338 (+) | 450 | WP_005701262.1 | pilin | Machinery gene |
| NT05HA_RS06725 (NT05HA_1465) | pilB | 1470363..1471772 (+) | 1410 | WP_005701263.1 | GspE/PulE family protein | Machinery gene |
| NT05HA_RS06730 (NT05HA_1466) | pilC | 1471765..1473003 (+) | 1239 | WP_005701265.1 | type II secretion system F family protein | Machinery gene |
| NT05HA_RS06735 (NT05HA_1467) | - | 1473000..1473692 (+) | 693 | WP_005701266.1 | prepilin peptidase | - |
| NT05HA_RS06740 (NT05HA_1468) | coaE | 1473745..1474365 (+) | 621 | WP_005701267.1 | dephospho-CoA kinase | - |
| NT05HA_RS06745 (NT05HA_1469) | yacG | 1474358..1474570 (+) | 213 | WP_005701268.1 | DNA gyrase inhibitor YacG | - |
| NT05HA_RS06750 (NT05HA_1470) | - | 1474570..1474836 (+) | 267 | WP_005701270.1 | GNAT family N-acetyltransferase | - |
| NT05HA_RS06755 (NT05HA_1471) | - | 1475203..1476576 (+) | 1374 | WP_005701272.1 | alanine/glycine:cation symporter family protein | - |
| NT05HA_RS06760 (NT05HA_1473) | raiA | 1476803..1477125 (+) | 323 | Protein_1318 | ribosome-associated translation inhibitor RaiA | - |
Sequence
Protein
Download Length: 412 a.a. Molecular weight: 46770.26 Da Isoelectric Point: 10.2607
>NTDB_id=34472 NT05HA_RS06730 WP_005701265.1 1471765..1473003(+) (pilC) [Aggregatibacter aphrophilus NJ8700]
MRKLKLFNWHGVNRLQQKQKGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCALLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFAAMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICLTLTILFIRARL
KHSPWFNRQKIRLINATPVLNHIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSSHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
MRKLKLFNWHGVNRLQQKQKGTIVAESAVIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCALLSQLATLLQAAVPLKNS
LQILLQHCTNIALNAWLRQLLKDIESGLAFSQALEKQNVEKQNQYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFAAMYDNSSAQLPTFTQVLLTLSQGLQDYWLHLLICLTLTILFIRARL
KHSPWFNRQKIRLINATPVLNHIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSSHIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ
Nucleotide
Download Length: 1239 bp
>NTDB_id=34472 NT05HA_RS06730 WP_005701265.1 1471765..1473003(+) (pilC) [Aggregatibacter aphrophilus NJ8700]
ATGCGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTCTACAGCAAAAGCAGAAAGGCACTATAGTGGCGGAAAG
CGCTGTAATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AGCCTAAAAACGCCGAAGTCTGTGCGTTACTTTCTCAGCTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATTTTGTTACAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTAA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTGTGCCATGAAATCGCGCAACACAAACAGCAGGCATTGGCGTTG
CAACGGAAGATTCGAAAAATTCTGCTTTATCCGGTGTTGGTACTTGGCATATCGCTGATTTTAACCGCACTTTTACTGCT
GTTTATCGTGCCGCAATTCGCCGCGATGTATGACAATAGCAGCGCGCAACTCCCGACTTTCACCCAGGTGCTACTCACAC
TGTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTAATTTGTCTTACGTTGACTATTCTGTTTATTCGCGCCCGCTTG
AAACATTCCCCTTGGTTTAATCGGCAAAAAATTCGATTAATCAATGCCACACCGGTGCTGAATCACATCGTGCAACTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCATTTT
TACCACAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTGTTAATCGAAGAAGTTCAGTCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGTAGCCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
AGTGGGCGAACAAAGTGGTCAGCTCCCCAAAATGTTGCAATTTATTGCCAACGACCATCAACAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGTTGGAGCCGCTGTTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGGATG
TATTTGCCGATTTTCAATATGGGTGCGTTGGTGCAATGA
ATGCGTAAACTGAAATTATTTAACTGGCACGGGGTTAACCGTCTACAGCAAAAGCAGAAAGGCACTATAGTGGCGGAAAG
CGCTGTAATAGCACAACAACAGCTGATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AGCCTAAAAACGCCGAAGTCTGTGCGTTACTTTCTCAGCTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATTTTGTTACAACATTGCACCAATATTGCGCTAAACGCTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAAAACGTAGAAAAACAAAATCAATATTTGACCTATCAAGATCGCCAATTAA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTGTGCCATGAAATCGCGCAACACAAACAGCAGGCATTGGCGTTG
CAACGGAAGATTCGAAAAATTCTGCTTTATCCGGTGTTGGTACTTGGCATATCGCTGATTTTAACCGCACTTTTACTGCT
GTTTATCGTGCCGCAATTCGCCGCGATGTATGACAATAGCAGCGCGCAACTCCCGACTTTCACCCAGGTGCTACTCACAC
TGTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTAATTTGTCTTACGTTGACTATTCTGTTTATTCGCGCCCGCTTG
AAACATTCCCCTTGGTTTAATCGGCAAAAAATTCGATTAATCAATGCCACACCGGTGCTGAATCACATCGTGCAACTTTC
CCGTTTGGTGGGATTTAGCCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCATTTT
TACCACAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTGTTAATCGAAGAAGTTCAGTCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGTAGCCATATTTTTCCGTTGGCGGCACAACAAATGCTACA
AGTGGGCGAACAAAGTGGTCAGCTCCCCAAAATGTTGCAATTTATTGCCAACGACCATCAACAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGTTGGAGCCGCTGTTGATGGTCATTATCGGTGGGCTTATCGGCTTAATTATGCTCGGGATG
TATTTGCCGATTTTCAATATGGGTGCGTTGGTGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
60.539 |
99.029 |
0.6 |
| pilC | Haemophilus influenzae 86-028NP |
60.294 |
99.029 |
0.597 |
| pilC | Glaesserella parasuis strain SC1401 |
40.049 |
100 |
0.4 |