NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	GBR75_RS08105	Genome accession	NZ_CP045468
Coordinates	1691229..1691915 (-)	Length	228 a.a.
NCBI ID	WP_000692876.1	Uniprot ID	-
Organism	Staphylococcus aureus strain SAW1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1686229..1696915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBR75_RS08060 (GBR75_08210)	rpmA	1687000..1687284 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
GBR75_RS08065 (GBR75_08215)	-	1687296..1687616 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
GBR75_RS08070 (GBR75_08220)	rplU	1687622..1687930 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
GBR75_RS08075 (GBR75_08225)	mreD	1688166..1688696 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
GBR75_RS08080 (GBR75_08230)	mreC	1688696..1689538 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
GBR75_RS08085 (GBR75_08235)	-	1689737..1689856 (-)	120	WP_000840603.1	hypothetical protein	-
GBR75_RS08090 (GBR75_08240)	-	1689930..1690403 (-)	474	WP_001236737.1	DUF4930 family protein	-
GBR75_RS08095 (GBR75_08245)	-	1690563..1690760 (+)	198	WP_000025835.1	hypothetical protein	-
GBR75_RS08100 (GBR75_08250)	-	1690877..1691161 (-)	285	WP_000171863.1	hypothetical protein	-
GBR75_RS08105 (GBR75_08255)	ysxA/radC	1691229..1691915 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
GBR75_RS08110 (GBR75_08260)	-	1691912..1692619 (-)	708	WP_000261111.1	prepilin peptidase	-
GBR75_RS08115 (GBR75_08265)	-	1692887..1694158 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
GBR75_RS08120 (GBR75_08270)	-	1694171..1696801 (-)	2631	WP_000425345.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.21 Da Isoelectric Point: 6.7572

                                >NTDB_id=344516 GBR75_RS08105 WP_000692876.1 1691229..1691915(-) (ysxA/radC) [Staphylococcus aureus strain SAW1]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=344516 GBR75_RS08105 WP_000692876.1 1691229..1691915(-) (ysxA/radC) [Staphylococcus aureus strain SAW1]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0344516