Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXD78_RS02045 Genome accession   NZ_CP035795
Coordinates   377394..377900 (-) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella melitensis strain B15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 372394..382900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXD78_RS02015 (EXD78_02015) - 374462..375091 (+) 630 WP_002967687.1 MarC family protein -
  EXD78_RS02020 (EXD78_02020) phnN 375182..375760 (-) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  EXD78_RS02025 (EXD78_02025) phnF 375947..376708 (+) 762 WP_004683825.1 phosphonate metabolism transcriptional regulator PhnF -
  EXD78_RS17130 - 376851..377238 (+) 388 Protein_368 hypothetical protein -
  EXD78_RS02040 (EXD78_02040) - 377290..377490 (+) 201 WP_002971429.1 hypothetical protein -
  EXD78_RS02045 (EXD78_02045) ssb 377394..377900 (-) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  EXD78_RS02050 (EXD78_02050) - 378468..378668 (+) 201 WP_002964232.1 hypothetical protein -
  EXD78_RS02055 (EXD78_02055) uvrA 378799..381723 (+) 2925 WP_004686427.1 excinuclease ABC subunit UvrA -
  EXD78_RS02060 (EXD78_02060) - 381910..382185 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=344471 EXD78_RS02045 WP_002967690.1 377394..377900(-) (ssb) [Brucella melitensis strain B15]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=344471 EXD78_RS02045 WP_002967690.1 377394..377900(-) (ssb) [Brucella melitensis strain B15]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment