Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DD1591_RS03450 Genome accession   NC_012912
Coordinates   790998..791546 (-) Length   182 a.a.
NCBI ID   WP_012768452.1    Uniprot ID   A0A5S4UFQ9
Organism   Dickeya chrysanthemi Ech1591     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 756020..791546 790998..791546 within 0


Gene organization within MGE regions


Location: 756020..791546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD1591_RS03315 (Dd1591_0662) ugpC 756020..757120 (+) 1101 WP_012768424.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  DD1591_RS03320 (Dd1591_0663) - 757234..758235 (+) 1002 WP_012768425.1 sugar ABC transporter permease -
  DD1591_RS03325 (Dd1591_0664) - 758248..759300 (+) 1053 WP_012768426.1 carbohydrate ABC transporter permease -
  DD1591_RS03330 (Dd1591_0665) - 759301..760332 (+) 1032 WP_012768427.1 LacI family DNA-binding transcriptional regulator -
  DD1591_RS03335 (Dd1591_0666) - 760512..761513 (+) 1002 WP_012768428.1 AAA family ATPase -
  DD1591_RS03340 (Dd1591_0667) - 761596..762633 (+) 1038 WP_012768429.1 IS630 family transposase -
  DD1591_RS03345 (Dd1591_0668) - 762661..763209 (+) 549 WP_012768430.1 hypothetical protein -
  DD1591_RS03350 (Dd1591_0669) - 763373..765481 (-) 2109 WP_012768431.1 hypothetical protein -
  DD1591_RS03355 (Dd1591_0670) - 765534..769280 (-) 3747 WP_012768432.1 contractile injection system tape measure protein -
  DD1591_RS03360 (Dd1591_0671) - 769277..771772 (-) 2496 WP_012768433.1 hypothetical protein -
  DD1591_RS03365 (Dd1591_0672) - 771775..772602 (-) 828 WP_012768434.1 hypothetical protein -
  DD1591_RS03370 (Dd1591_0673) - 772664..776740 (-) 4077 WP_012768435.1 baseplate J/gp47 family protein -
  DD1591_RS03375 (Dd1591_0674) - 776800..777219 (-) 420 WP_012768436.1 GPW/gp25 family protein -
  DD1591_RS03380 (Dd1591_0675) - 777222..777521 (-) 300 WP_012768437.1 PAAR domain-containing protein -
  DD1591_RS03385 (Dd1591_0676) vgrG 777592..779382 (-) 1791 WP_012768438.1 type VI secretion system tip protein VgrG -
  DD1591_RS03390 (Dd1591_0677) - 779395..780042 (-) 648 WP_012768439.1 hypothetical protein -
  DD1591_RS03395 (Dd1591_0678) - 780058..780237 (-) 180 WP_012768440.1 hypothetical protein -
  DD1591_RS03400 (Dd1591_0679) - 780265..780723 (-) 459 WP_012768441.1 phage tail protein -
  DD1591_RS03405 (Dd1591_0680) - 780830..781300 (-) 471 WP_012768442.1 phage tail protein -
  DD1591_RS03410 (Dd1591_0681) - 781396..782949 (-) 1554 WP_012768443.1 phage tail sheath C-terminal domain-containing protein -
  DD1591_RS03415 (Dd1591_0682) - 783061..783873 (-) 813 WP_012768444.1 hypothetical protein -
  DD1591_RS03420 (Dd1591_0683) - 783879..784451 (-) 573 WP_012768445.1 DUF4255 domain-containing protein -
  DD1591_RS21300 (Dd1591_0684) - 784666..785157 (+) 492 WP_012768446.1 hypothetical protein -
  DD1591_RS03425 (Dd1591_0685) - 785296..785883 (-) 588 WP_012768447.1 hypothetical protein -
  DD1591_RS03430 (Dd1591_0686) - 786058..786687 (+) 630 WP_012768448.1 NAD-dependent dehydratase -
  DD1591_RS03435 (Dd1591_0687) - 786722..787300 (+) 579 WP_012768449.1 flavin reductase family protein -
  DD1591_RS21305 (Dd1591_0688) - 787361..788050 (-) 690 WP_012768450.1 hypothetical protein -
  DD1591_RS21310 (Dd1591_0689) - 788107..788304 (-) 198 WP_238550819.1 hypothetical protein -
  DD1591_RS03445 (Dd1591_0690) - 788504..790384 (-) 1881 WP_012764352.1 reverse transcriptase domain-containing protein -
  DD1591_RS03450 (Dd1591_0691) ssb 790998..791546 (-) 549 WP_012768452.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19494.55 Da        Isoelectric Point: 5.2440

>NTDB_id=34446 DD1591_RS03450 WP_012768452.1 790998..791546(-) (ssb) [Dickeya chrysanthemi Ech1591]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRAGGGAPAGGNMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=34446 DD1591_RS03450 WP_012768452.1 790998..791546(-) (ssb) [Dickeya chrysanthemi Ech1591]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCGGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAACAGACCGGCGAGCAGAAGGAGCGCACCG
AGTGGCACCGTGTCGCACTGTACGGCAAGCTGGCTGAGATCGCCGGTGAGTACCTGCGCAAAGGCTCCCAAGTGTATATC
GAAGGCCAATTGCGTACCCGCAAATGGCAGGATCAGGGCGGCCAGGACCGCTACACCACGGAAGTGGTGGTTGATATCTC
CGGCAGCATGCAAATGCTGGGCGGTCGCGCTGGCGGCGGCGCTCCGGCCGGTGGCAACATGGGCGGCAATATGGGTGGTG
GTAACGCGCCGCAAGGTGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGCGGCGGTCAGTCCCGT
CCGCAGCAAAGCGCGCCGATGCCGAGCAACGAACCGCCGATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4UFQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.194

100

0.758
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.571
  ssb Neisseria meningitidis MC58

45.263

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.473

Multiple sequence alignment