Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GCU76_RS15300 Genome accession   NZ_CP045425
Coordinates   2789985..2790680 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain JAAA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784985..2795680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS15275 minD 2785921..2786727 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  GCU76_RS15280 minC 2786729..2787409 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  GCU76_RS15285 mreD 2787462..2787980 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  GCU76_RS15290 mreC 2787977..2788849 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  GCU76_RS15295 mreB 2788880..2789893 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GCU76_RS15300 ysxA/radC 2789985..2790680 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  GCU76_RS15305 maf 2790717..2791286 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GCU76_RS15310 spoIIB 2791439..2792437 (-) 999 WP_041055430.1 stage II sporulation protein SpoIIB -
  GCU76_RS15315 comC 2792571..2793317 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  GCU76_RS15320 folC 2793457..2794749 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=344240 GCU76_RS15300 WP_003246034.1 2789985..2790680(-) (ysxA/radC) [Bacillus subtilis strain JAAA]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=344240 GCU76_RS15300 WP_003246034.1 2789985..2790680(-) (ysxA/radC) [Bacillus subtilis strain JAAA]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424