Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SDEG_RS09160 | Genome accession | NC_012891 |
| Coordinates | 1812971..1813462 (-) | Length | 163 a.a. |
| NCBI ID | WP_002983122.1 | Uniprot ID | A0A9X8XIP7 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis GGS_124 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1807971..1818462
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDEG_RS09145 (SDEG_1880) | - | 1810704..1811648 (+) | 945 | WP_003059456.1 | magnesium transporter CorA family protein | - |
| SDEG_RS09150 (SDEG_1881) | - | 1811780..1812436 (+) | 657 | WP_003059462.1 | DUF1129 domain-containing protein | - |
| SDEG_RS09155 (SDEG_1882) | rpsR | 1812567..1812806 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| SDEG_RS09160 (SDEG_1883) | ssb | 1812971..1813462 (-) | 492 | WP_002983122.1 | single-stranded DNA-binding protein | Machinery gene |
| SDEG_RS09165 (SDEG_1884) | rpsF | 1813484..1813774 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| SDEG_RS11400 (SDEG_1885) | - | 1814733..1814969 (-) | 237 | WP_012767537.1 | hypothetical protein | - |
| SDEG_RS09175 (SDEG_1886) | mutY | 1815192..1816358 (+) | 1167 | WP_003060012.1 | A/G-specific adenine glycosylase | - |
| SDEG_RS09180 (SDEG_1887) | trxA | 1816409..1816723 (-) | 315 | WP_003052691.1 | thioredoxin | - |
| SDEG_RS09185 (SDEG_1888) | - | 1816949..1818268 (+) | 1320 | WP_012767538.1 | FAD-containing oxidoreductase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17981.76 Da Isoelectric Point: 4.8894
>NTDB_id=34408 SDEG_RS09160 WP_002983122.1 1812971..1813462(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=34408 SDEG_RS09160 WP_002983122.1 1812971..1813462(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.195 |
100 |
0.632 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |