Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ELE36_RS17415 Genome accession   NZ_CP035704
Coordinates   4067431..4068489 (-) Length   352 a.a.
NCBI ID   WP_129835547.1    Uniprot ID   -
Organism   Pseudolysobacter antarcticus strain AQ6-296     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4062431..4073489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELE36_RS17395 (ELE36_17385) pilQ 4063235..4065502 (-) 2268 WP_242512296.1 type IV pilus secretin PilQ -
  ELE36_RS17400 (ELE36_17390) - 4065520..4066062 (-) 543 WP_129835541.1 pilus assembly protein PilP -
  ELE36_RS17405 (ELE36_17395) pilO 4066059..4066709 (-) 651 WP_129835543.1 type 4a pilus biogenesis protein PilO -
  ELE36_RS17410 (ELE36_17400) - 4066706..4067431 (-) 726 WP_129835545.1 PilN domain-containing protein -
  ELE36_RS17415 (ELE36_17405) pilM 4067431..4068489 (-) 1059 WP_129835547.1 pilus assembly protein PilM Machinery gene
  ELE36_RS17420 (ELE36_17410) - 4068738..4071245 (+) 2508 WP_129835549.1 penicillin-binding protein 1A -
  ELE36_RS17425 (ELE36_17415) - 4071245..4071886 (+) 642 WP_129835551.1 hypothetical protein -
  ELE36_RS17430 (ELE36_17420) - 4071979..4073271 (-) 1293 WP_129835553.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37772.41 Da        Isoelectric Point: 4.4011

>NTDB_id=344007 ELE36_RS17415 WP_129835547.1 4067431..4068489(-) (pilM) [Pseudolysobacter antarcticus strain AQ6-296]
MGLLSTRTPPLVGIDISSTAVKLLQLSESGGRYRVDCYAVEPLPPNAVVEKNIVEVEAVGEALRRALNRSGAKTKFAAAA
VAGSAVITKIIPMPADLSDDDLEGQIQIEANQYIPYPLEEVSLDFEVLGPLKDSPEMVNVLLAASRTENVDLRVAALDLG
GLTAKIIDVEAYAMENAYKLIAAQHNVPADALVAVVDVGATMTTLIVLQGGRTIYSREQVFGGKQLTDEVMRRYALSYED
ASQAKRHGGLPESYEIEVLEPFKEAMVQQISRLLQFFFAGSEYNKVDQIVLAGGCASISGVTDLIENQLNVHALVANPLA
NMSLSPRVQAQVLAMDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=344007 ELE36_RS17415 WP_129835547.1 4067431..4068489(-) (pilM) [Pseudolysobacter antarcticus strain AQ6-296]
GTGGGGCTGCTGAGCACTAGAACACCACCGCTGGTCGGCATCGACATCAGTTCGACCGCTGTGAAATTGCTCCAATTGAG
CGAGTCGGGTGGACGCTATCGCGTGGATTGTTACGCGGTGGAGCCCCTGCCGCCGAATGCTGTGGTCGAAAAGAACATCG
TTGAGGTCGAGGCCGTCGGTGAAGCACTGCGACGCGCGTTGAACCGCTCCGGCGCCAAGACCAAGTTTGCCGCCGCCGCG
GTTGCCGGCTCCGCGGTTATCACCAAGATCATTCCGATGCCGGCAGATTTGTCCGATGACGATCTGGAAGGTCAGATCCA
AATCGAGGCGAATCAGTACATTCCGTATCCGCTGGAAGAAGTCAGCCTGGATTTCGAAGTTTTGGGGCCGCTCAAGGACA
GCCCCGAGATGGTTAACGTGTTGCTGGCCGCATCGCGTACCGAAAACGTCGATCTGCGCGTTGCGGCGCTGGATCTCGGT
GGATTGACCGCCAAGATCATCGACGTCGAAGCCTATGCGATGGAGAACGCGTACAAGCTGATCGCGGCACAACACAACGT
GCCGGCCGATGCGCTGGTCGCCGTTGTCGATGTTGGCGCGACCATGACCACGCTTATCGTGCTACAGGGCGGACGCACGA
TTTATTCGCGCGAACAAGTATTTGGTGGCAAGCAGCTGACCGACGAAGTGATGCGCCGTTACGCGCTGTCGTACGAGGAT
GCCAGTCAGGCCAAGCGTCATGGCGGATTGCCTGAATCGTATGAAATCGAAGTGCTGGAACCGTTCAAAGAGGCAATGGT
GCAGCAGATCAGTCGTTTGCTGCAGTTCTTCTTCGCCGGCAGTGAATACAACAAGGTTGATCAAATCGTGCTCGCCGGAG
GCTGTGCCTCGATCAGCGGCGTCACCGACTTGATTGAAAACCAATTGAACGTGCATGCGCTGGTTGCCAATCCGCTGGCC
AATATGTCGCTGTCGCCGCGCGTGCAGGCACAGGTCTTGGCTATGGATGCGCCCGCGCTGATGATTGCCTGTGGTCTCGC
GCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

54.678

97.159

0.531
  comM Acinetobacter nosocomialis M2

54.678

97.159

0.531
  comM Acinetobacter baylyi ADP1

52.632

97.159

0.511
  pilM Legionella pneumophila strain ERS1305867

44.507

100

0.449

Multiple sequence alignment