Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELE36_RS04615 Genome accession   NZ_CP035704
Coordinates   1073826..1074317 (+) Length   163 a.a.
NCBI ID   WP_129831972.1    Uniprot ID   A0A411HGT7
Organism   Pseudolysobacter antarcticus strain AQ6-296     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1068826..1079317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELE36_RS04605 (ELE36_04605) - 1070990..1072135 (+) 1146 WP_129831970.1 cyanophycinase -
  ELE36_RS04610 (ELE36_04610) - 1072179..1073654 (-) 1476 WP_165371475.1 FUSC family protein -
  ELE36_RS04615 (ELE36_04615) ssb 1073826..1074317 (+) 492 WP_129831972.1 single-stranded DNA-binding protein Machinery gene
  ELE36_RS04620 (ELE36_04620) - 1074528..1075199 (+) 672 WP_129831973.1 DNA alkylation repair protein -
  ELE36_RS04625 (ELE36_04625) - 1075435..1076322 (-) 888 Protein_890 IS1595 family transposase -
  ELE36_RS04630 (ELE36_04630) - 1076522..1079047 (-) 2526 WP_165371476.1 RCC1 repeat-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17465.32 Da        Isoelectric Point: 5.3826

>NTDB_id=343997 ELE36_RS04615 WP_129831972.1 1073826..1074317(+) (ssb) [Pseudolysobacter antarcticus strain AQ6-296]
MARGINKVILVGNLGADPETRYTASGAAITSIRIATSEAWKDKTTGEQQERTEWHRIKFFGRLAEIAGEYLKKGSQVYVE
GKLRTDEYEKDGVKRYSTDVIADEMQMLGGRGEGGGGGMGGGGGGSGAPRERAERGPARGPQSAPTRNTPPPSDSFDDDE
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=343997 ELE36_RS04615 WP_129831972.1 1073826..1074317(+) (ssb) [Pseudolysobacter antarcticus strain AQ6-296]
ATGGCACGCGGAATCAATAAAGTCATCCTCGTCGGCAACCTCGGCGCCGACCCCGAAACGCGTTACACCGCCAGCGGCGC
GGCGATCACCAGCATTCGCATCGCGACCTCGGAAGCGTGGAAAGACAAGACCACCGGCGAGCAGCAAGAGCGCACCGAAT
GGCATCGCATCAAGTTTTTCGGGCGCCTTGCCGAAATCGCTGGCGAGTACCTGAAGAAAGGCAGCCAGGTGTATGTCGAA
GGCAAATTGCGCACCGACGAATACGAGAAGGATGGCGTGAAACGTTATTCCACCGACGTGATCGCCGATGAAATGCAGAT
GCTCGGCGGTCGCGGTGAAGGTGGCGGCGGAGGCATGGGTGGAGGCGGTGGTGGTAGCGGAGCACCACGCGAACGCGCCG
AACGTGGTCCCGCACGCGGGCCGCAATCCGCACCGACGCGCAACACGCCGCCGCCGTCAGACAGTTTTGACGACGACGAA
ATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411HGT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.247

100

0.571
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.515
  ssb Neisseria meningitidis MC58

45.143

100

0.485
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.485

Multiple sequence alignment