Detailed information NTG0343927

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: EPB57_RS19760
• Genome accession: NZ_CP035700
• Coordinates: 2452717..2453256 (+)
• Length: 179 a.a.
• NCBI ID: WP_005381235.1
• Uniprot ID: A0AAW9BS04
• Organism: Vibrio alginolyticus strain 2013V-1302
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2453427..2453861	2452717..2453256	flank	171

Gene organization within MGE regions

Location: 2452717..2453861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB57_RS19760	ssb	2452717..2453256 (+)	540	WP_005381235.1	single-stranded DNA-binding protein	Machinery gene
EPB57_RS19765	tnpA	2453427..2453861 (+)	435	WP_017633711.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 179 a.a.
• Molecular weight: 19892.93 Da
• Isoelectric Point: 4.9164

>NTDB_id=343927 EPB57_RS19760 WP_005381235.1 2452717..2453256(+) (ssb) [Vibrio alginolyticus strain 2013V-1302]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide

• Length: 540 bp

>NTDB_id=343927 EPB57_RS19760 WP_005381235.1 2452717..2453256(+) (ssb) [Vibrio alginolyticus strain 2013V-1302]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-105)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	80.328	100	0.821
ssb	Glaesserella parasuis strain SC1401	54.922	100	0.592
ssb	Neisseria meningitidis MC58	46.328	98.883	0.458
ssb	Neisseria gonorrhoeae MS11	46.328	98.883	0.458