Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   ET948_RS11560 Genome accession   NZ_CP035697
Coordinates   2468696..2469283 (-) Length   195 a.a.
NCBI ID   WP_167514888.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463696..2474283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS11540 - 2463717..2464979 (-) 1263 WP_154115698.1 DUF945 family protein -
  ET948_RS11545 - 2465242..2467176 (+) 1935 WP_154115699.1 ATP-binding protein -
  ET948_RS11550 - 2467194..2467691 (+) 498 WP_154115700.1 response regulator -
  ET948_RS11555 - 2468081..2468629 (+) 549 WP_078924532.1 hypothetical protein -
  ET948_RS11560 tfoX 2468696..2469283 (-) 588 WP_167514888.1 TfoX/Sxy family DNA transformation protein Regulator
  ET948_RS11565 - 2469657..2470577 (+) 921 WP_078924530.1 HDOD domain-containing protein -
  ET948_RS11570 - 2470598..2471503 (+) 906 WP_078924529.1 lysine exporter LysO family protein -
  ET948_RS11575 - 2471634..2472146 (+) 513 WP_154115702.1 hypothetical protein -
  ET948_RS11580 panP 2472276..2473931 (+) 1656 WP_154115703.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22961.36 Da        Isoelectric Point: 7.4306

>NTDB_id=343884 ET948_RS11560 WP_167514888.1 2468696..2469283(-) (tfoX) [Vibrio cincinnatiensis strain 2409-02]
MIEHTFFDYVIKFGAYQKRSMFGGIGLFQEDAMYALLTEDTIFIRGSEELDQQLMDLGCEKFRHVKKQTTATVNYYDITE
LFDKRHPDLESIIRRSIQYSIEQRNFQKSQASRRLRDLPNMQLTLERMVKKAGVDDVDTFIQLGAPEVFSKVRQVYGSDV
DVKLLWKFAGAIEGVHWKLLQEPKKRQLLEYCQHH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=343884 ET948_RS11560 WP_167514888.1 2468696..2469283(-) (tfoX) [Vibrio cincinnatiensis strain 2409-02]
ATGATTGAGCATACATTTTTTGATTATGTAATTAAGTTTGGCGCTTACCAAAAGCGTTCTATGTTTGGTGGTATTGGTTT
ATTTCAAGAAGATGCCATGTATGCATTATTAACGGAAGATACGATTTTCATTCGTGGTAGTGAAGAGTTGGATCAACAGC
TTATGGACTTAGGGTGTGAGAAGTTCCGCCATGTTAAGAAGCAAACGACCGCCACGGTGAATTATTATGACATTACGGAA
CTGTTTGATAAACGCCACCCTGACCTAGAGAGTATTATTCGGCGTTCTATTCAATATTCGATAGAACAACGTAATTTTCA
AAAATCTCAGGCTAGCCGCCGTTTACGCGATTTACCGAATATGCAGTTAACTCTGGAACGTATGGTGAAAAAAGCGGGAG
TCGATGATGTGGACACCTTTATCCAGCTTGGTGCTCCTGAAGTATTTAGCAAAGTGCGGCAAGTGTATGGTAGTGATGTT
GATGTAAAACTATTGTGGAAATTTGCTGGAGCCATTGAAGGTGTACACTGGAAGTTGTTGCAAGAACCTAAAAAACGGCA
GCTATTGGAGTATTGTCAGCACCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

79.897

99.487

0.795
  tfoX Vibrio cholerae strain A1552

79.897

99.487

0.795
  tfoX Vibrio campbellii strain DS40M4

66.321

98.974

0.656
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.767

98.974

0.641
  tfoX Aliivibrio fischeri ES114

60.317

96.923

0.585

Multiple sequence alignment