Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ET948_RS05490 Genome accession   NZ_CP035697
Coordinates   1184824..1185417 (+) Length   197 a.a.
NCBI ID   WP_154115193.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179824..1190417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS05475 oxyR 1180253..1181143 (+) 891 WP_078926723.1 DNA-binding transcriptional regulator OxyR -
  ET948_RS05480 - 1181193..1183670 (-) 2478 WP_154115191.1 penicillin-binding protein 1A -
  ET948_RS05485 pilM 1183812..1184834 (+) 1023 WP_154115192.1 type IV pilus assembly protein PilM Machinery gene
  ET948_RS05490 pilN 1184824..1185417 (+) 594 WP_154115193.1 PilN domain-containing protein Machinery gene
  ET948_RS05495 pilO 1185410..1186000 (+) 591 WP_078926719.1 type 4a pilus biogenesis protein PilO Machinery gene
  ET948_RS05500 pilP 1185990..1186508 (+) 519 WP_078926718.1 pilus assembly protein PilP Machinery gene
  ET948_RS05505 pilQ 1186533..1188254 (+) 1722 WP_078926717.1 type IV pilus secretin PilQ Machinery gene
  ET948_RS05510 aroK 1188441..1188959 (+) 519 WP_078926716.1 shikimate kinase AroK -
  ET948_RS05515 aroB 1188987..1190078 (+) 1092 WP_154115194.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22586.96 Da        Isoelectric Point: 9.7503

>NTDB_id=343871 ET948_RS05490 WP_154115193.1 1184824..1185417(+) (pilN) [Vibrio cincinnatiensis strain 2409-02]
MLHNINLLPWREVQREAYRQHFIHLLILGVLLALGVQGGAGSYLEQQKQQQQGRLDFLNQHIRQLDERLHALKVTEQEHK
ALLTRLKVVEALQQKRNKSTDFMHLMPELIPEGVYVDKIKMNGQEVEMNGISDSTARLATMLDNLEKSPQLSAVGMHSIV
SGNRRFGKQFQSFKVSFLFHTSDQVVQKPAQKEASHD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=343871 ET948_RS05490 WP_154115193.1 1184824..1185417(+) (pilN) [Vibrio cincinnatiensis strain 2409-02]
ATGCTGCATAACATTAATTTGTTGCCGTGGCGAGAAGTACAGCGAGAAGCCTATCGGCAGCATTTCATCCATTTATTAAT
CTTAGGCGTACTTTTAGCGCTGGGCGTGCAAGGGGGGGCGGGAAGCTATCTAGAGCAGCAGAAGCAACAGCAGCAGGGGC
GACTGGATTTTCTTAACCAGCATATTCGCCAGTTAGATGAACGCCTTCATGCTTTAAAAGTGACAGAGCAAGAACATAAA
GCCTTATTAACCCGTTTAAAAGTGGTGGAGGCTTTGCAACAGAAACGCAATAAAAGTACTGACTTTATGCACCTGATGCC
GGAGTTAATTCCTGAAGGCGTCTATGTCGATAAAATCAAGATGAATGGGCAAGAGGTCGAAATGAACGGTATTAGCGATA
GTACCGCGCGTTTGGCAACCATGTTGGATAATTTGGAAAAATCGCCTCAGTTATCTGCAGTGGGAATGCACTCGATTGTG
TCGGGCAATCGTCGCTTTGGTAAGCAGTTTCAGAGTTTTAAAGTCTCTTTCCTCTTTCATACTTCCGATCAAGTGGTTCA
AAAGCCCGCTCAAAAGGAGGCTTCTCATGACTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

67.232

89.848

0.604
  pilN Vibrio campbellii strain DS40M4

63.128

90.863

0.574

Multiple sequence alignment