Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ET948_RS05500 Genome accession   NZ_CP035697
Coordinates   1185990..1186508 (+) Length   172 a.a.
NCBI ID   WP_078926718.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1180990..1191508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS05480 - 1181193..1183670 (-) 2478 WP_154115191.1 penicillin-binding protein 1A -
  ET948_RS05485 pilM 1183812..1184834 (+) 1023 WP_154115192.1 type IV pilus assembly protein PilM Machinery gene
  ET948_RS05490 pilN 1184824..1185417 (+) 594 WP_154115193.1 PilN domain-containing protein Machinery gene
  ET948_RS05495 pilO 1185410..1186000 (+) 591 WP_078926719.1 type 4a pilus biogenesis protein PilO Machinery gene
  ET948_RS05500 pilP 1185990..1186508 (+) 519 WP_078926718.1 pilus assembly protein PilP Machinery gene
  ET948_RS05505 pilQ 1186533..1188254 (+) 1722 WP_078926717.1 type IV pilus secretin PilQ Machinery gene
  ET948_RS05510 aroK 1188441..1188959 (+) 519 WP_078926716.1 shikimate kinase AroK -
  ET948_RS05515 aroB 1188987..1190078 (+) 1092 WP_154115194.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19179.99 Da        Isoelectric Point: 8.1199

>NTDB_id=343873 ET948_RS05500 WP_078926718.1 1185990..1186508(+) (pilP) [Vibrio cincinnatiensis strain 2409-02]
MRSSLRFLGWLCPLLLVGCQANEDSLEDYLLEVELQTQREVAQLAPVVQFQAFHYGQHGKREPFVLPQEALVQNQSVTQS
DCWQPVPRSKTGTLERYPLNQLRLRGVMSSGGSISALVQTPSGTVVNVKAGQYLGLNNGRITRVADDYLLIKETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343873 ET948_RS05500 WP_078926718.1 1185990..1186508(+) (pilP) [Vibrio cincinnatiensis strain 2409-02]
ATGAGAAGTAGCCTTAGATTTTTAGGCTGGCTATGCCCTTTGTTATTGGTTGGTTGTCAAGCCAATGAAGACTCTCTAGA
GGATTACTTACTTGAGGTGGAATTACAGACTCAAAGAGAAGTGGCTCAGCTTGCGCCTGTGGTTCAGTTTCAAGCCTTTC
ATTATGGACAACATGGCAAACGAGAACCGTTTGTCTTGCCCCAAGAAGCGCTAGTGCAAAATCAGTCGGTTACTCAGTCT
GACTGTTGGCAACCGGTACCTCGCAGTAAAACCGGAACGCTGGAACGTTATCCTCTCAATCAACTGCGTTTAAGAGGAGT
CATGAGTAGTGGAGGCAGTATCTCTGCCTTAGTTCAAACGCCGAGTGGAACGGTCGTCAATGTGAAAGCAGGGCAATACC
TCGGATTAAATAATGGACGAATCACTCGAGTTGCTGATGATTATCTATTGATAAAAGAAACCCTGCCTGATGGTTTAGGG
TGCTGGAATCAGCGTAATGTCAAATTGGCTTTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

70.122

95.349

0.669
  pilP Vibrio campbellii strain DS40M4

56.962

91.86

0.523

Multiple sequence alignment